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Cluster: Rep_1398_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1398_c_97 Rep_1398_c_97_111 135069 136979 + 9.B.18.2.1
STP Rep_1398_c_97 Rep_1398_c_97_112 136979 138142 + Aminotran_1_2
TC Rep_1398_c_97 Rep_1398_c_97_113 138202 138798 + 9.B.18.1.2
pfam Rep_1398_c_97 Rep_1398_c_97_114 138909 139649 + Wzz
TC Rep_1398_c_97 Rep_1398_c_97_115 139600 140292 + 8.A.3.1.2
pfam Rep_1398_c_97 Rep_1398_c_97_116 140308 140997 + PglD_N
CAZyme Rep_1398_c_97 Rep_1398_c_97_117 140984 142123 + GT4
CAZyme Rep_1398_c_97 Rep_1398_c_97_118 142129 143190 + GT2
CAZyme Rep_1398_c_97 Rep_1398_c_97_119 143208 144320 + GT4
CAZyme Rep_1398_c_97 Rep_1398_c_97_120 144304 145212 + GT2
pfam Rep_1398_c_97 Rep_1398_c_97_121 145229 146302 + EpsG
CAZyme Rep_1398_c_97 Rep_1398_c_97_122 146313 147431 + GT4
CAZyme Rep_1398_c_97 Rep_1398_c_97_123 147441 148634 + GT4
CAZyme Rep_1398_c_97 Rep_1398_c_97_124 148643 149674 + GT2
pfam Rep_1398_c_97 Rep_1398_c_97_125 149691 150854 + PS_pyruv_trans
CAZyme Rep_1398_c_97 Rep_1398_c_97_126 150874 152061 + GT4
CAZyme Rep_1398_c_97 Rep_1398_c_97_127 152083 153270 + GT4
CAZyme Rep_1398_c_97 Rep_1398_c_97_128 153403 154326 + GT101
CAZyme Rep_1398_c_97 Rep_1398_c_97_129 154338 155348 + GT2
pfam Rep_1398_c_97 Rep_1398_c_97_130 155359 156531 + FrhB_FdhB_N | FrhB_FdhB_C | Fer4_7
TC Rep_1398_c_97 Rep_1398_c_97_131 156602 158161 + 2.A.66.1.40
Gene ID: Rep_1398_c_97_111
Type: TC
Location: 135069 - 136979 (+)
Gene ID: Rep_1398_c_97_112
Type: STP
Location: 136979 - 138142 (+)
Gene ID: Rep_1398_c_97_113
Type: TC
Location: 138202 - 138798 (+)
Gene ID: Rep_1398_c_97_114
Type: pfam
Location: 138909 - 139649 (+)
Gene ID: Rep_1398_c_97_115
Type: TC
Location: 139600 - 140292 (+)
Gene ID: Rep_1398_c_97_116
Type: pfam
Location: 140308 - 140997 (+)
Gene ID: Rep_1398_c_97_117
Type: CAZyme
Location: 140984 - 142123 (+)
Gene ID: Rep_1398_c_97_118
Type: CAZyme
Location: 142129 - 143190 (+)
Gene ID: Rep_1398_c_97_119
Type: CAZyme
Location: 143208 - 144320 (+)
Gene ID: Rep_1398_c_97_120
Type: CAZyme
Location: 144304 - 145212 (+)
Gene ID: Rep_1398_c_97_121
Type: pfam
Location: 145229 - 146302 (+)
Gene ID: Rep_1398_c_97_122
Type: CAZyme
Location: 146313 - 147431 (+)
Gene ID: Rep_1398_c_97_123
Type: CAZyme
Location: 147441 - 148634 (+)
Gene ID: Rep_1398_c_97_124
Type: CAZyme
Location: 148643 - 149674 (+)
Gene ID: Rep_1398_c_97_125
Type: pfam
Location: 149691 - 150854 (+)
Gene ID: Rep_1398_c_97_126
Type: CAZyme
Location: 150874 - 152061 (+)
Gene ID: Rep_1398_c_97_127
Type: CAZyme
Location: 152083 - 153270 (+)
Gene ID: Rep_1398_c_97_128
Type: CAZyme
Location: 153403 - 154326 (+)
Gene ID: Rep_1398_c_97_129
Type: CAZyme
Location: 154338 - 155348 (+)
Gene ID: Rep_1398_c_97_130
Type: pfam
Location: 155359 - 156531 (+)
Gene ID: Rep_1398_c_97_131
Type: TC
Location: 156602 - 158161 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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