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Cluster: Rep_1398_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1398_c_97 Rep_1398_c_97_78 85098 87155 + 3.A.16.1.1
pfam Rep_1398_c_97 Rep_1398_c_97_79 87295 89388 + UvrD-helicase | AAA_19
pfam Rep_1398_c_97 Rep_1398_c_97_80 89699 90550 + PRD | PRD | CAT_RBD
TC Rep_1398_c_97 Rep_1398_c_97_81 90547 92643 + 4.A.1.1.9
CAZyme Rep_1398_c_97 Rep_1398_c_97_82 92877 95441 + GH63
TC Rep_1398_c_97 Rep_1398_c_97_83 95724 97094 + 2.A.2.3.3
TF Rep_1398_c_97 Rep_1398_c_97_84 97149 97982 - HTH_AraC | HTH_AraC
CAZyme Rep_1398_c_97 Rep_1398_c_97_85 98197 101235 + GH2
TC Rep_1398_c_97 Rep_1398_c_97_86 101584 101889 + 4.A.3.2.8
TC Rep_1398_c_97 Rep_1398_c_97_87 101969 102790 + 4.A.3.2.8
TC Rep_1398_c_97 Rep_1398_c_97_88 102800 103291 + 4.A.3.2.4
CAZyme Rep_1398_c_97 Rep_1398_c_97_89 103557 104861 + GH4
pfam Rep_1398_c_97 Rep_1398_c_97_90 104918 105652 + YdjC
TC Rep_1398_c_97 Rep_1398_c_97_91 105665 105991 + 4.A.3.2.2
TF Rep_1398_c_97 Rep_1398_c_97_92 106255 106959 + GntR
TC Rep_1398_c_97 Rep_1398_c_97_93 107440 108882 + 2.A.118.1.8
Gene ID: Rep_1398_c_97_78
Type: TC
Location: 85098 - 87155 (+)
Gene ID: Rep_1398_c_97_79
Type: pfam
Location: 87295 - 89388 (+)
Gene ID: Rep_1398_c_97_80
Type: pfam
Location: 89699 - 90550 (+)
Gene ID: Rep_1398_c_97_81
Type: TC
Location: 90547 - 92643 (+)
Gene ID: Rep_1398_c_97_82
Type: CAZyme
Location: 92877 - 95441 (+)
Gene ID: Rep_1398_c_97_83
Type: TC
Location: 95724 - 97094 (+)
Gene ID: Rep_1398_c_97_84
Type: TF
Location: 97149 - 97982 (-)
Gene ID: Rep_1398_c_97_85
Type: CAZyme
Location: 98197 - 101235 (+)
Gene ID: Rep_1398_c_97_86
Type: TC
Location: 101584 - 101889 (+)
Gene ID: Rep_1398_c_97_87
Type: TC
Location: 101969 - 102790 (+)
Gene ID: Rep_1398_c_97_88
Type: TC
Location: 102800 - 103291 (+)
Gene ID: Rep_1398_c_97_89
Type: CAZyme
Location: 103557 - 104861 (+)
Gene ID: Rep_1398_c_97_90
Type: pfam
Location: 104918 - 105652 (+)
Gene ID: Rep_1398_c_97_91
Type: TC
Location: 105665 - 105991 (+)
Gene ID: Rep_1398_c_97_92
Type: TF
Location: 106255 - 106959 (+)
Gene ID: Rep_1398_c_97_93
Type: TC
Location: 107440 - 108882 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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