Cluster: Rep_1398_CGC23
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1398
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1398_c_96 | Rep_1398_c_96_42 | 36653 | 38392 | + | 3.A.1.121.4 |
| pfam | Rep_1398_c_96 | Rep_1398_c_96_43 | 38692 | 39399 | - | Sugar_tr | MFS_1 | MFS_2 |
| CAZyme | Rep_1398_c_96 | Rep_1398_c_96_44 | 39616 | 41253 | - | GH13_31 |
| TF | Rep_1398_c_96 | Rep_1398_c_96_45 | 41366 | 42244 | - | HTH_AraC | HTH_AraC |
| TC | Rep_1398_c_96 | Rep_1398_c_96_46 | 42445 | 43947 | - | 3.A.1.135.5 |
Gene ID: Rep_1398_c_96_42
Type: TC
Location: 36653 - 38392 (+)
Type: TC
Location: 36653 - 38392 (+)
Gene ID: Rep_1398_c_96_43
Type: pfam
Location: 38692 - 39399 (-)
Type: pfam
Location: 38692 - 39399 (-)
Gene ID: Rep_1398_c_96_44
Type: CAZyme
Location: 39616 - 41253 (-)
Type: CAZyme
Location: 39616 - 41253 (-)
Gene ID: Rep_1398_c_96_45
Type: TF
Location: 41366 - 42244 (-)
Type: TF
Location: 41366 - 42244 (-)
Gene ID: Rep_1398_c_96_46
Type: TC
Location: 42445 - 43947 (-)
Type: TC
Location: 42445 - 43947 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900766315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.