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Cluster: Rep_1398_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1398_c_79 Rep_1398_c_79_2 373 2157 - 3.A.1.106.3
TC Rep_1398_c_79 Rep_1398_c_79_3 2159 3889 - 3.A.1.106.3
CAZyme Rep_1398_c_79 Rep_1398_c_79_4 4376 5176 + CE4
pfam Rep_1398_c_79 Rep_1398_c_79_5 5263 5895 - FTCD_C
CAZyme Rep_1398_c_79 Rep_1398_c_79_6 5907 7052 - GT4
pfam Rep_1398_c_79 Rep_1398_c_79_7 7058 8338 - Glyco_transf_4
TC Rep_1398_c_79 Rep_1398_c_79_8 8391 9893 - 2.A.66.1.40
CAZyme Rep_1398_c_79 Rep_1398_c_79_9 9940 11049 - GT2
CAZyme Rep_1398_c_79 Rep_1398_c_79_10 11185 11931 - GT26
Gene ID: Rep_1398_c_79_2
Type: TC
Location: 373 - 2157 (-)
Gene ID: Rep_1398_c_79_3
Type: TC
Location: 2159 - 3889 (-)
Gene ID: Rep_1398_c_79_4
Type: CAZyme
Location: 4376 - 5176 (+)
Gene ID: Rep_1398_c_79_5
Type: pfam
Location: 5263 - 5895 (-)
Gene ID: Rep_1398_c_79_6
Type: CAZyme
Location: 5907 - 7052 (-)
Gene ID: Rep_1398_c_79_7
Type: pfam
Location: 7058 - 8338 (-)
Gene ID: Rep_1398_c_79_8
Type: TC
Location: 8391 - 9893 (-)
Gene ID: Rep_1398_c_79_9
Type: CAZyme
Location: 9940 - 11049 (-)
Gene ID: Rep_1398_c_79_10
Type: CAZyme
Location: 11185 - 11931 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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