Cluster: Rep_1398_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1398
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1398_c_24 | Rep_1398_c_24_2 | 273 | 2351 | - | GH42 |
| pfam | Rep_1398_c_24 | Rep_1398_c_24_3 | 2510 | 4051 | - | SBP_bac_1 | DUF3502 |
| TC | Rep_1398_c_24 | Rep_1398_c_24_4 | 4104 | 5000 | - | 3.A.1.1.29 |
| TC | Rep_1398_c_24 | Rep_1398_c_24_5 | 5013 | 6005 | - | 3.A.1.1.10 |
| TF | Rep_1398_c_24 | Rep_1398_c_24_6 | 6239 | 7771 | + | HTH_AraC |
| TC | Rep_1398_c_24 | Rep_1398_c_24_7 | 7771 | 9573 | + | 8.A.59.2.1 |
Gene ID: Rep_1398_c_24_2
Type: CAZyme
Location: 273 - 2351 (-)
Type: CAZyme
Location: 273 - 2351 (-)
Gene ID: Rep_1398_c_24_3
Type: pfam
Location: 2510 - 4051 (-)
Type: pfam
Location: 2510 - 4051 (-)
Gene ID: Rep_1398_c_24_4
Type: TC
Location: 4104 - 5000 (-)
Type: TC
Location: 4104 - 5000 (-)
Gene ID: Rep_1398_c_24_5
Type: TC
Location: 5013 - 6005 (-)
Type: TC
Location: 5013 - 6005 (-)
Gene ID: Rep_1398_c_24_6
Type: TF
Location: 6239 - 7771 (+)
Type: TF
Location: 6239 - 7771 (+)
Gene ID: Rep_1398_c_24_7
Type: TC
Location: 7771 - 9573 (+)
Type: TC
Location: 7771 - 9573 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp900766315
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.