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Cluster: Rep_1353_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1353_c_15 Rep_1353_c_15_54 42498 43118 - 2.A.95.1.3
pfam Rep_1353_c_15 Rep_1353_c_15_55 43188 48713 - F5_F8_type_C | F5_F8_type_C | Peptidase_M60
NULL(UNKNOWN) Rep_1353_c_15 Rep_1353_c_15_56 48723 50486 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1353_c_15 Rep_1353_c_15_57 50554 53259 - GH18
NULL(UNKNOWN) Rep_1353_c_15 Rep_1353_c_15_58 53290 53712 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1353_c_15 Rep_1353_c_15_59 54123 56249 + GH18
CAZyme Rep_1353_c_15 Rep_1353_c_15_60 56268 58553 + GH18
pfam Rep_1353_c_15 Rep_1353_c_15_61 58561 59574 + Patatin
pfam Rep_1353_c_15 Rep_1353_c_15_62 60052 60816 + Exo_endo_phos
TC Rep_1353_c_15 Rep_1353_c_15_63 60831 62102 - 2.A.3.6.1
Gene ID: Rep_1353_c_15_54
Type: TC
Location: 42498 - 43118 (-)
Gene ID: Rep_1353_c_15_55
Type: pfam
Location: 43188 - 48713 (-)
Gene ID: Rep_1353_c_15_56
Type:
Location: 48723 - 50486 (-)
Gene ID: Rep_1353_c_15_57
Type: CAZyme
Location: 50554 - 53259 (-)
Gene ID: Rep_1353_c_15_58
Type:
Location: 53290 - 53712 (-)
Gene ID: Rep_1353_c_15_59
Type: CAZyme
Location: 54123 - 56249 (+)
Gene ID: Rep_1353_c_15_60
Type: CAZyme
Location: 56268 - 58553 (+)
Gene ID: Rep_1353_c_15_61
Type: pfam
Location: 58561 - 59574 (+)
Gene ID: Rep_1353_c_15_62
Type: pfam
Location: 60052 - 60816 (+)
Gene ID: Rep_1353_c_15_63
Type: TC
Location: 60831 - 62102 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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