dbCAN Logo

Cluster: Rep_130_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_130_c_0 Rep_130_c_0_476 596979 599042 - GH20
pfam Rep_130_c_0 Rep_130_c_0_477 599568 600440 - META | META
TC Rep_130_c_0 Rep_130_c_0_478 600551 602146 - 1.B.9.4.2
NULL(UNKNOWN) Rep_130_c_0 Rep_130_c_0_479 602393 603382 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_130_c_0 Rep_130_c_0_480 603608 604630 - YceG
TC Rep_130_c_0 Rep_130_c_0_481 604770 606443 + 4.C.1.1.4
TC Rep_130_c_0 Rep_130_c_0_482 606857 609457 + 3.A.9.1.2
peptidase Rep_130_c_0 Rep_130_c_0_483 609591 611600 - M49.003
TF Rep_130_c_0 Rep_130_c_0_484 611731 612522 - LytTR
TC Rep_130_c_0 Rep_130_c_0_485 612538 613677 - 8.A.59.2.1
TC Rep_130_c_0 Rep_130_c_0_486 613913 615136 - 3.A.1.122.1
TC Rep_130_c_0 Rep_130_c_0_487 615345 616145 - 3.A.1.122.2
Gene ID: Rep_130_c_0_476
Type: CAZyme
Location: 596979 - 599042 (-)
Gene ID: Rep_130_c_0_477
Type: pfam
Location: 599568 - 600440 (-)
Gene ID: Rep_130_c_0_478
Type: TC
Location: 600551 - 602146 (-)
Gene ID: Rep_130_c_0_479
Type:
Location: 602393 - 603382 (-)
Gene ID: Rep_130_c_0_480
Type: pfam
Location: 603608 - 604630 (-)
Gene ID: Rep_130_c_0_481
Type: TC
Location: 604770 - 606443 (+)
Gene ID: Rep_130_c_0_482
Type: TC
Location: 606857 - 609457 (+)
Gene ID: Rep_130_c_0_483
Type: peptidase
Location: 609591 - 611600 (-)
Gene ID: Rep_130_c_0_484
Type: TF
Location: 611731 - 612522 (-)
Gene ID: Rep_130_c_0_485
Type: TC
Location: 612538 - 613677 (-)
Gene ID: Rep_130_c_0_486
Type: TC
Location: 613913 - 615136 (-)
Gene ID: Rep_130_c_0_487
Type: TC
Location: 615345 - 616145 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List