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Cluster: Rep_130_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_130_c_0 Rep_130_c_0_324 395600 396841 - 9.B.10.1.1
pfam Rep_130_c_0 Rep_130_c_0_325 397015 398457 - RVT_1 | GIIM
pfam Rep_130_c_0 Rep_130_c_0_326 398940 400100 - GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg
TC Rep_130_c_0 Rep_130_c_0_327 400280 401788 - 2.A.1.7.8
sulfatase Rep_130_c_0 Rep_130_c_0_328 401830 402915 - S1_22
pfam Rep_130_c_0 Rep_130_c_0_329 403461 404033 + DUF4199
CAZyme Rep_130_c_0 Rep_130_c_0_330 404069 405040 + GT2
Gene ID: Rep_130_c_0_324
Type: TC
Location: 395600 - 396841 (-)
Gene ID: Rep_130_c_0_325
Type: pfam
Location: 397015 - 398457 (-)
Gene ID: Rep_130_c_0_326
Type: pfam
Location: 398940 - 400100 (-)
Gene ID: Rep_130_c_0_327
Type: TC
Location: 400280 - 401788 (-)
Gene ID: Rep_130_c_0_328
Type: sulfatase
Location: 401830 - 402915 (-)
Gene ID: Rep_130_c_0_329
Type: pfam
Location: 403461 - 404033 (+)
Gene ID: Rep_130_c_0_330
Type: CAZyme
Location: 404069 - 405040 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_130_c_0_325 vegetarian > omnivore 1.34406 0.03761

🧭 Explore Read Mapping of CGC

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