Cluster: Rep_130_CGC18
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_130
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_130_c_0 | Rep_130_c_0_1221 | 1522163 | 1524664 | - | GH95 |
| pfam | Rep_130_c_0 | Rep_130_c_0_1222 | 1524687 | 1525088 | - | HIT | DcpS_C |
| CAZyme | Rep_130_c_0 | Rep_130_c_0_1223 | 1525868 | 1526983 | - | GT28 |
| pfam | Rep_130_c_0 | Rep_130_c_0_1224 | 1527005 | 1527541 | - | Lysine_decarbox | LDcluster4 |
| pfam | Rep_130_c_0 | Rep_130_c_0_1225 | 1527624 | 1528001 | - | Ribonuc_L-PSP |
| TC | Rep_130_c_0 | Rep_130_c_0_1226 | 1528148 | 1528786 | + | 1.C.113.1.3 |
| STP | Rep_130_c_0 | Rep_130_c_0_1227 | 1529789 | 1530733 | - | Fer4 |
| CAZyme | Rep_130_c_0 | Rep_130_c_0_1228 | 1530730 | 1531383 | - | CE4 |
| pfam | Rep_130_c_0 | Rep_130_c_0_1229 | 1531560 | 1535027 | - | TMEM260-like |
| TC | Rep_130_c_0 | Rep_130_c_0_1230 | 1535295 | 1537136 | - | 2.A.47.4.8 |
| pfam | Rep_130_c_0 | Rep_130_c_0_1231 | 1537279 | 1537983 | - | SIMPL |
| TC | Rep_130_c_0 | Rep_130_c_0_1232 | 1538086 | 1538658 | - | 2.A.51.1.6 |
| pfam | Rep_130_c_0 | Rep_130_c_0_1233 | 1538683 | 1539222 | - | Chromate_transp |
| NULL(UNKNOWN) | Rep_130_c_0 | Rep_130_c_0_1234 | 1539372 | 1539800 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_130_c_0 | Rep_130_c_0_1235 | 1540161 | 1542362 | - | GH36 |
Gene ID: Rep_130_c_0_1221
Type: CAZyme
Location: 1522163 - 1524664 (-)
Type: CAZyme
Location: 1522163 - 1524664 (-)
Gene ID: Rep_130_c_0_1222
Type: pfam
Location: 1524687 - 1525088 (-)
Type: pfam
Location: 1524687 - 1525088 (-)
Gene ID: Rep_130_c_0_1223
Type: CAZyme
Location: 1525868 - 1526983 (-)
Type: CAZyme
Location: 1525868 - 1526983 (-)
Gene ID: Rep_130_c_0_1224
Type: pfam
Location: 1527005 - 1527541 (-)
Type: pfam
Location: 1527005 - 1527541 (-)
Gene ID: Rep_130_c_0_1225
Type: pfam
Location: 1527624 - 1528001 (-)
Type: pfam
Location: 1527624 - 1528001 (-)
Gene ID: Rep_130_c_0_1226
Type: TC
Location: 1528148 - 1528786 (+)
Type: TC
Location: 1528148 - 1528786 (+)
Gene ID: Rep_130_c_0_1227
Type: STP
Location: 1529789 - 1530733 (-)
Type: STP
Location: 1529789 - 1530733 (-)
Gene ID: Rep_130_c_0_1228
Type: CAZyme
Location: 1530730 - 1531383 (-)
Type: CAZyme
Location: 1530730 - 1531383 (-)
Gene ID: Rep_130_c_0_1229
Type: pfam
Location: 1531560 - 1535027 (-)
Type: pfam
Location: 1531560 - 1535027 (-)
Gene ID: Rep_130_c_0_1230
Type: TC
Location: 1535295 - 1537136 (-)
Type: TC
Location: 1535295 - 1537136 (-)
Gene ID: Rep_130_c_0_1231
Type: pfam
Location: 1537279 - 1537983 (-)
Type: pfam
Location: 1537279 - 1537983 (-)
Gene ID: Rep_130_c_0_1232
Type: TC
Location: 1538086 - 1538658 (-)
Type: TC
Location: 1538086 - 1538658 (-)
Gene ID: Rep_130_c_0_1233
Type: pfam
Location: 1538683 - 1539222 (-)
Type: pfam
Location: 1538683 - 1539222 (-)
Gene ID: Rep_130_c_0_1234
Type:
Location: 1539372 - 1539800 (-)
Type:
Location: 1539372 - 1539800 (-)
Gene ID: Rep_130_c_0_1235
Type: CAZyme
Location: 1540161 - 1542362 (-)
Type: CAZyme
Location: 1540161 - 1542362 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella sp900539625
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.