Cluster: Rep_127_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_127
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_127_c_1 | Rep_127_c_1_1002 | 1166789 | 1167751 | - | 8.A.5.1.3 |
| pfam | Rep_127_c_1 | Rep_127_c_1_1003 | 1167773 | 1169215 | - | PIF1 | AAA_19 | UvrD_C_2 | AAA_30 |
| TC | Rep_127_c_1 | Rep_127_c_1_1004 | 1169337 | 1170557 | - | 2.A.1.7.2 |
| NULL(UNKNOWN) | Rep_127_c_1 | Rep_127_c_1_1005 | 1171039 | 1171962 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_127_c_1 | Rep_127_c_1_1006 | 1172223 | 1176083 | + | GH20 |
Gene ID: Rep_127_c_1_1002
Type: TC
Location: 1166789 - 1167751 (-)
Type: TC
Location: 1166789 - 1167751 (-)
Gene ID: Rep_127_c_1_1003
Type: pfam
Location: 1167773 - 1169215 (-)
Type: pfam
Location: 1167773 - 1169215 (-)
Gene ID: Rep_127_c_1_1004
Type: TC
Location: 1169337 - 1170557 (-)
Type: TC
Location: 1169337 - 1170557 (-)
Gene ID: Rep_127_c_1_1005
Type:
Location: 1171039 - 1171962 (+)
Type:
Location: 1171039 - 1171962 (+)
Gene ID: Rep_127_c_1_1006
Type: CAZyme
Location: 1172223 - 1176083 (+)
Type: CAZyme
Location: 1172223 - 1176083 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Species
Alloprevotella sp000437675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.