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Cluster: Rep_1261_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1261_c_20 Rep_1261_c_20_12 9767 10456 - GT2
pfam Rep_1261_c_20 Rep_1261_c_20_13 10614 12611 - DUF6077
pfam Rep_1261_c_20 Rep_1261_c_20_14 12626 13537 - 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd
CAZyme Rep_1261_c_20 Rep_1261_c_20_15 13509 14732 - GT4
CAZyme Rep_1261_c_20 Rep_1261_c_20_16 14747 15718 - GT2
NULL(UNKNOWN) Rep_1261_c_20 Rep_1261_c_20_17 15724 17643 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1261_c_20 Rep_1261_c_20_18 17715 18980 - 3.A.1.103.6
TC Rep_1261_c_20 Rep_1261_c_20_19 18992 19792 - 3.A.1.104.1
Gene ID: Rep_1261_c_20_12
Type: CAZyme
Location: 9767 - 10456 (-)
Gene ID: Rep_1261_c_20_13
Type: pfam
Location: 10614 - 12611 (-)
Gene ID: Rep_1261_c_20_14
Type: pfam
Location: 12626 - 13537 (-)
Gene ID: Rep_1261_c_20_15
Type: CAZyme
Location: 13509 - 14732 (-)
Gene ID: Rep_1261_c_20_16
Type: CAZyme
Location: 14747 - 15718 (-)
Gene ID: Rep_1261_c_20_17
Type:
Location: 15724 - 17643 (-)
Gene ID: Rep_1261_c_20_18
Type: TC
Location: 17715 - 18980 (-)
Gene ID: Rep_1261_c_20_19
Type: TC
Location: 18992 - 19792 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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