dbCAN Logo

Cluster: Rep_1259_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1259_c_1 Rep_1259_c_1_31 34551 35807 + 4.A.3.2.2
pfam Rep_1259_c_1 Rep_1259_c_1_32 35819 36160 + PTS_IIA
CAZyme Rep_1259_c_1 Rep_1259_c_1_33 36226 37671 + GH1
TC Rep_1259_c_1 Rep_1259_c_1_34 37686 38279 + 2.A.115.2.12
CAZyme Rep_1259_c_1 Rep_1259_c_1_35 38276 39727 + GH1
pfam Rep_1259_c_1 Rep_1259_c_1_36 39724 40548 + S6PP | S6PP | Hydrolase_3
pfam Rep_1259_c_1 Rep_1259_c_1_37 40620 43043 - Sigma54_activat | PRD | PRD
TC Rep_1259_c_1 Rep_1259_c_1_38 43373 43792 + 4.A.6.1.12
TC Rep_1259_c_1 Rep_1259_c_1_39 43811 44572 + 4.A.6.1.19
TC Rep_1259_c_1 Rep_1259_c_1_40 44574 45431 + 4.A.6.1.17
pfam Rep_1259_c_1 Rep_1259_c_1_41 45449 46378 + 2-Hacid_dh | 2-Hacid_dh_C
TC Rep_1259_c_1 Rep_1259_c_1_42 46379 46852 + 4.A.6.1.2
Gene ID: Rep_1259_c_1_31
Type: TC
Location: 34551 - 35807 (+)
Gene ID: Rep_1259_c_1_32
Type: pfam
Location: 35819 - 36160 (+)
Gene ID: Rep_1259_c_1_33
Type: CAZyme
Location: 36226 - 37671 (+)
Gene ID: Rep_1259_c_1_34
Type: TC
Location: 37686 - 38279 (+)
Gene ID: Rep_1259_c_1_35
Type: CAZyme
Location: 38276 - 39727 (+)
Gene ID: Rep_1259_c_1_36
Type: pfam
Location: 39724 - 40548 (+)
Gene ID: Rep_1259_c_1_37
Type: pfam
Location: 40620 - 43043 (-)
Gene ID: Rep_1259_c_1_38
Type: TC
Location: 43373 - 43792 (+)
Gene ID: Rep_1259_c_1_39
Type: TC
Location: 43811 - 44572 (+)
Gene ID: Rep_1259_c_1_40
Type: TC
Location: 44574 - 45431 (+)
Gene ID: Rep_1259_c_1_41
Type: pfam
Location: 45449 - 46378 (+)
Gene ID: Rep_1259_c_1_42
Type: TC
Location: 46379 - 46852 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List