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Cluster: Rep_1259_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1259_c_0 Rep_1259_c_0_28 23634 24947 + 3.A.1.1.45
TC Rep_1259_c_0 Rep_1259_c_0_29 25028 25870 + 3.A.1.1.45
TC Rep_1259_c_0 Rep_1259_c_0_30 25872 26705 + 3.A.1.1.45
TF Rep_1259_c_0 Rep_1259_c_0_31 26735 27733 + LacI
CAZyme Rep_1259_c_0 Rep_1259_c_0_32 27748 29226 + GH77
TC Rep_1259_c_0 Rep_1259_c_0_33 29245 30336 + 3.A.1.1.26
sulfatase Rep_1259_c_0 Rep_1259_c_0_34 30456 31907 - S1_46
TC Rep_1259_c_0 Rep_1259_c_0_35 32089 33438 + 3.A.1.1.18
TC Rep_1259_c_0 Rep_1259_c_0_36 33515 34396 + 3.A.1.1.25
TC Rep_1259_c_0 Rep_1259_c_0_37 34408 35283 + 3.A.1.1.18
pfam Rep_1259_c_0 Rep_1259_c_0_38 35300 35473 + DUF6903
TC Rep_1259_c_0 Rep_1259_c_0_39 35486 36577 + 3.A.1.1.26
pfam Rep_1259_c_0 Rep_1259_c_0_40 36589 38073 + GalP_UDP_transf | GalP_UDP_tr_C
CAZyme Rep_1259_c_0 Rep_1259_c_0_41 38070 40214 + GH112
Gene ID: Rep_1259_c_0_28
Type: TC
Location: 23634 - 24947 (+)
Gene ID: Rep_1259_c_0_29
Type: TC
Location: 25028 - 25870 (+)
Gene ID: Rep_1259_c_0_30
Type: TC
Location: 25872 - 26705 (+)
Gene ID: Rep_1259_c_0_31
Type: TF
Location: 26735 - 27733 (+)
Gene ID: Rep_1259_c_0_32
Type: CAZyme
Location: 27748 - 29226 (+)
Gene ID: Rep_1259_c_0_33
Type: TC
Location: 29245 - 30336 (+)
Gene ID: Rep_1259_c_0_34
Type: sulfatase
Location: 30456 - 31907 (-)
Gene ID: Rep_1259_c_0_35
Type: TC
Location: 32089 - 33438 (+)
Gene ID: Rep_1259_c_0_36
Type: TC
Location: 33515 - 34396 (+)
Gene ID: Rep_1259_c_0_37
Type: TC
Location: 34408 - 35283 (+)
Gene ID: Rep_1259_c_0_38
Type: pfam
Location: 35300 - 35473 (+)
Gene ID: Rep_1259_c_0_39
Type: TC
Location: 35486 - 36577 (+)
Gene ID: Rep_1259_c_0_40
Type: pfam
Location: 36589 - 38073 (+)
Gene ID: Rep_1259_c_0_41
Type: CAZyme
Location: 38070 - 40214 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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