Cluster: Rep_1259_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1259
- CGC Family ID: CGCFAM_00027
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1259_c_7 | Rep_1259_c_7_28 | 26893 | 27177 | + | 4.A.1.2.6 |
| TC | Rep_1259_c_7 | Rep_1259_c_7_29 | 27226 | 28761 | + | 4.A.1.2.11 |
| CAZyme | Rep_1259_c_7 | Rep_1259_c_7_30 | 28774 | 30189 | + | GH1 |
| pfam | Rep_1259_c_7 | Rep_1259_c_7_31 | 30643 | 31482 | - | ABC_trans_CmpB |
| TC | Rep_1259_c_7 | Rep_1259_c_7_32 | 31809 | 32333 | + | 3.A.1.25.3 |
| TC | Rep_1259_c_7 | Rep_1259_c_7_33 | 32570 | 34030 | + | 3.A.1.121.3 |
Gene ID: Rep_1259_c_7_28
Type: TC
Location: 26893 - 27177 (+)
Type: TC
Location: 26893 - 27177 (+)
Gene ID: Rep_1259_c_7_29
Type: TC
Location: 27226 - 28761 (+)
Type: TC
Location: 27226 - 28761 (+)
Gene ID: Rep_1259_c_7_30
Type: CAZyme
Location: 28774 - 30189 (+)
Type: CAZyme
Location: 28774 - 30189 (+)
Gene ID: Rep_1259_c_7_31
Type: pfam
Location: 30643 - 31482 (-)
Type: pfam
Location: 30643 - 31482 (-)
Gene ID: Rep_1259_c_7_32
Type: TC
Location: 31809 - 32333 (+)
Type: TC
Location: 31809 - 32333 (+)
Gene ID: Rep_1259_c_7_33
Type: TC
Location: 32570 - 34030 (+)
Type: TC
Location: 32570 - 34030 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Faecalicoccus
Species
Faecalicoccus sp900546545
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.