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Cluster: Rep_1259_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1259_c_4 Rep_1259_c_4_66 68326 70857 + 3.A.3.5.15
pfam Rep_1259_c_4 Rep_1259_c_4_67 71316 72686 + MatE | MatE
pfam Rep_1259_c_4 Rep_1259_c_4_68 72877 75585 + PRD | EIIA-man
TC Rep_1259_c_4 Rep_1259_c_4_69 75572 75997 + 4.A.6.1.19
TC Rep_1259_c_4 Rep_1259_c_4_70 76017 76481 + 4.A.6.1.19
TC Rep_1259_c_4 Rep_1259_c_4_71 76492 77268 + 4.A.6.1.19
TC Rep_1259_c_4 Rep_1259_c_4_72 77289 78128 + 4.A.6.1.19
STP Rep_1259_c_4 Rep_1259_c_4_73 78185 79150 + SIS | SIS
pfam Rep_1259_c_4 Rep_1259_c_4_74 79219 79854 + Hydrolase | HAD_2
CAZyme Rep_1259_c_4 Rep_1259_c_4_75 80064 81533 + GH77
Gene ID: Rep_1259_c_4_66
Type: TC
Location: 68326 - 70857 (+)
Gene ID: Rep_1259_c_4_67
Type: pfam
Location: 71316 - 72686 (+)
Gene ID: Rep_1259_c_4_68
Type: pfam
Location: 72877 - 75585 (+)
Gene ID: Rep_1259_c_4_69
Type: TC
Location: 75572 - 75997 (+)
Gene ID: Rep_1259_c_4_70
Type: TC
Location: 76017 - 76481 (+)
Gene ID: Rep_1259_c_4_71
Type: TC
Location: 76492 - 77268 (+)
Gene ID: Rep_1259_c_4_72
Type: TC
Location: 77289 - 78128 (+)
Gene ID: Rep_1259_c_4_73
Type: STP
Location: 78185 - 79150 (+)
Gene ID: Rep_1259_c_4_74
Type: pfam
Location: 79219 - 79854 (+)
Gene ID: Rep_1259_c_4_75
Type: CAZyme
Location: 80064 - 81533 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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