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Cluster: Rep_1259_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1259_c_0 Rep_1259_c_0_2 687 1982 + 3.D.6.1.2
TC Rep_1259_c_0 Rep_1259_c_0_3 1996 3150 + 3.D.6.1.2
pfam Rep_1259_c_0 Rep_1259_c_0_4 3147 3659 + FMN_bind
TC Rep_1259_c_0 Rep_1259_c_0_5 3670 4320 + 3.D.6.1.2
TC Rep_1259_c_0 Rep_1259_c_0_6 4324 4899 + 3.D.6.1.2
NULL(UNKNOWN) Rep_1259_c_0 Rep_1259_c_0_7 4899 5087 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1259_c_0 Rep_1259_c_0_8 5091 5408 + 3.D.6.1.1
pfam Rep_1259_c_0 Rep_1259_c_0_9 5428 7062 - NFACT-R_1 | NFACT_N | NFACT-R_2
pfam Rep_1259_c_0 Rep_1259_c_0_10 7167 7745 + Guanylate_kin
TC Rep_1259_c_0 Rep_1259_c_0_11 7886 8362 + 4.A.1.1.14
pfam Rep_1259_c_0 Rep_1259_c_0_12 8377 9213 + PRD | PRD | CAT_RBD
TC Rep_1259_c_0 Rep_1259_c_0_13 9311 10711 + 4.A.1.2.11
CAZyme Rep_1259_c_0 Rep_1259_c_0_14 10713 12143 + GH1
Gene ID: Rep_1259_c_0_2
Type: TC
Location: 687 - 1982 (+)
Gene ID: Rep_1259_c_0_3
Type: TC
Location: 1996 - 3150 (+)
Gene ID: Rep_1259_c_0_4
Type: pfam
Location: 3147 - 3659 (+)
Gene ID: Rep_1259_c_0_5
Type: TC
Location: 3670 - 4320 (+)
Gene ID: Rep_1259_c_0_6
Type: TC
Location: 4324 - 4899 (+)
Gene ID: Rep_1259_c_0_7
Type:
Location: 4899 - 5087 (+)
Gene ID: Rep_1259_c_0_8
Type: TC
Location: 5091 - 5408 (+)
Gene ID: Rep_1259_c_0_9
Type: pfam
Location: 5428 - 7062 (-)
Gene ID: Rep_1259_c_0_10
Type: pfam
Location: 7167 - 7745 (+)
Gene ID: Rep_1259_c_0_11
Type: TC
Location: 7886 - 8362 (+)
Gene ID: Rep_1259_c_0_12
Type: pfam
Location: 8377 - 9213 (+)
Gene ID: Rep_1259_c_0_13
Type: TC
Location: 9311 - 10711 (+)
Gene ID: Rep_1259_c_0_14
Type: CAZyme
Location: 10713 - 12143 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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