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Cluster: Rep_1238_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1238_c_76 Rep_1238_c_76_2 2084 3043 + GT2
pfam Rep_1238_c_76 Rep_1238_c_76_3 3027 3407 + GtrA_DPMS_TM
CAZyme Rep_1238_c_76 Rep_1238_c_76_4 3517 4236 + GT2
pfam Rep_1238_c_76 Rep_1238_c_76_5 4236 4592 + DUF2304
CAZyme Rep_1238_c_76 Rep_1238_c_76_6 4585 5547 + GT2
CAZyme Rep_1238_c_76 Rep_1238_c_76_7 5557 6351 + GT2
CAZyme Rep_1238_c_76 Rep_1238_c_76_8 6364 7407 + GT113
pfam Rep_1238_c_76 Rep_1238_c_76_9 7407 8528 + Amino_oxidase | GLF | NAD_binding_8
TC Rep_1238_c_76 Rep_1238_c_76_10 8521 9960 + 2.A.66.2.16
NULL(UNKNOWN) Rep_1238_c_76 Rep_1238_c_76_11 9998 11200 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1238_c_76 Rep_1238_c_76_12 11295 12029 + 3.A.1.103.4
TC Rep_1238_c_76 Rep_1238_c_76_13 12043 12807 + 3.A.1.103.4
pfam Rep_1238_c_76 Rep_1238_c_76_14 12852 14291 + DUF2142
pfam Rep_1238_c_76 Rep_1238_c_76_15 14331 15221 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
CAZyme Rep_1238_c_76 Rep_1238_c_76_16 15333 16115 + GT2
CAZyme Rep_1238_c_76 Rep_1238_c_76_17 16108 16953 + GT2
CAZyme Rep_1238_c_76 Rep_1238_c_76_18 16980 19151 + GT4
CAZyme Rep_1238_c_76 Rep_1238_c_76_19 19263 20345 + GT4
CAZyme Rep_1238_c_76 Rep_1238_c_76_20 20357 21193 + GT2
CAZyme Rep_1238_c_76 Rep_1238_c_76_21 21196 22350 + GT4
Gene ID: Rep_1238_c_76_2
Type: CAZyme
Location: 2084 - 3043 (+)
Gene ID: Rep_1238_c_76_3
Type: pfam
Location: 3027 - 3407 (+)
Gene ID: Rep_1238_c_76_4
Type: CAZyme
Location: 3517 - 4236 (+)
Gene ID: Rep_1238_c_76_5
Type: pfam
Location: 4236 - 4592 (+)
Gene ID: Rep_1238_c_76_6
Type: CAZyme
Location: 4585 - 5547 (+)
Gene ID: Rep_1238_c_76_7
Type: CAZyme
Location: 5557 - 6351 (+)
Gene ID: Rep_1238_c_76_8
Type: CAZyme
Location: 6364 - 7407 (+)
Gene ID: Rep_1238_c_76_9
Type: pfam
Location: 7407 - 8528 (+)
Gene ID: Rep_1238_c_76_10
Type: TC
Location: 8521 - 9960 (+)
Gene ID: Rep_1238_c_76_11
Type:
Location: 9998 - 11200 (+)
Gene ID: Rep_1238_c_76_12
Type: TC
Location: 11295 - 12029 (+)
Gene ID: Rep_1238_c_76_13
Type: TC
Location: 12043 - 12807 (+)
Gene ID: Rep_1238_c_76_14
Type: pfam
Location: 12852 - 14291 (+)
Gene ID: Rep_1238_c_76_15
Type: pfam
Location: 14331 - 15221 (+)
Gene ID: Rep_1238_c_76_16
Type: CAZyme
Location: 15333 - 16115 (+)
Gene ID: Rep_1238_c_76_17
Type: CAZyme
Location: 16108 - 16953 (+)
Gene ID: Rep_1238_c_76_18
Type: CAZyme
Location: 16980 - 19151 (+)
Gene ID: Rep_1238_c_76_19
Type: CAZyme
Location: 19263 - 20345 (+)
Gene ID: Rep_1238_c_76_20
Type: CAZyme
Location: 20357 - 21193 (+)
Gene ID: Rep_1238_c_76_21
Type: CAZyme
Location: 21196 - 22350 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1238_c_76_9 vegetarian > vegan 1.39161 0.03424
Rep_1238_c_76_19 vegan > omnivore 1.97575 0.00574
Rep_1238_c_76_21 vegan > omnivore 5.16641 0.00574

🧭 Explore Read Mapping of CGC

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