Cluster: Rep_1142_CGC2
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1142
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1142_c_0 | Rep_1142_c_0_24 | 28256 | 30514 | - | GT35 |
| CAZyme | Rep_1142_c_0 | Rep_1142_c_0_25 | 30540 | 32057 | - | GH77 |
| TC | Rep_1142_c_0 | Rep_1142_c_0_26 | 32536 | 33807 | + | 3.A.1.1.26 |
| TC | Rep_1142_c_0 | Rep_1142_c_0_27 | 33918 | 35210 | + | 3.A.1.1.26 |
| TC | Rep_1142_c_0 | Rep_1142_c_0_28 | 35212 | 36054 | + | 3.A.1.1.26 |
| NULL(UNKNOWN) | Rep_1142_c_0 | Rep_1142_c_0_29 | 36197 | 36997 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_1142_c_0 | Rep_1142_c_0_30 | 37007 | 37993 | + | LacI |
| TC | Rep_1142_c_0 | Rep_1142_c_0_31 | 38022 | 38963 | - | 2.A.115.1.1 |
Gene ID: Rep_1142_c_0_24
Type: CAZyme
Location: 28256 - 30514 (-)
Type: CAZyme
Location: 28256 - 30514 (-)
Gene ID: Rep_1142_c_0_25
Type: CAZyme
Location: 30540 - 32057 (-)
Type: CAZyme
Location: 30540 - 32057 (-)
Gene ID: Rep_1142_c_0_26
Type: TC
Location: 32536 - 33807 (+)
Type: TC
Location: 32536 - 33807 (+)
Gene ID: Rep_1142_c_0_27
Type: TC
Location: 33918 - 35210 (+)
Type: TC
Location: 33918 - 35210 (+)
Gene ID: Rep_1142_c_0_28
Type: TC
Location: 35212 - 36054 (+)
Type: TC
Location: 35212 - 36054 (+)
Gene ID: Rep_1142_c_0_29
Type:
Location: 36197 - 36997 (+)
Type:
Location: 36197 - 36997 (+)
Gene ID: Rep_1142_c_0_30
Type: TF
Location: 37007 - 37993 (+)
Type: TF
Location: 37007 - 37993 (+)
Gene ID: Rep_1142_c_0_31
Type: TC
Location: 38022 - 38963 (-)
Type: TC
Location: 38022 - 38963 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus mitis_CB
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.