Cluster: Rep_111_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_111
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_111_c_89 | Rep_111_c_89_5 | 9865 | 10899 | - | 2.A.4.7.9 |
| NULL(UNKNOWN) | Rep_111_c_89 | Rep_111_c_89_6 | 10878 | 11639 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_111_c_89 | Rep_111_c_89_7 | 11651 | 13051 | - | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| CAZyme | Rep_111_c_89 | Rep_111_c_89_8 | 13038 | 14174 | - | GT28 |
| TC | Rep_111_c_89 | Rep_111_c_89_9 | 14184 | 15587 | - | 2.A.103.1.3 |
Gene ID: Rep_111_c_89_5
Type: TC
Location: 9865 - 10899 (-)
Type: TC
Location: 9865 - 10899 (-)
Gene ID: Rep_111_c_89_6
Type:
Location: 10878 - 11639 (-)
Type:
Location: 10878 - 11639 (-)
Gene ID: Rep_111_c_89_7
Type: pfam
Location: 11651 - 13051 (-)
Type: pfam
Location: 11651 - 13051 (-)
Gene ID: Rep_111_c_89_8
Type: CAZyme
Location: 13038 - 14174 (-)
Type: CAZyme
Location: 13038 - 14174 (-)
Gene ID: Rep_111_c_89_9
Type: TC
Location: 14184 - 15587 (-)
Type: TC
Location: 14184 - 15587 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.