Cluster: Rep_111_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_111
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_111_c_250 | Rep_111_c_250_4 | 5476 | 8538 | + | 1.B.14.6.13 |
| TC | Rep_111_c_250 | Rep_111_c_250_5 | 8558 | 10123 | + | 8.A.46.2.1 |
| NULL(UNKNOWN) | Rep_111_c_250 | Rep_111_c_250_6 | 10150 | 11205 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_111_c_250 | Rep_111_c_250_7 | 11216 | 12433 | + | BT_3987-like_N | Laminin_G_3 |
| CAZyme | Rep_111_c_250 | Rep_111_c_250_8 | 12459 | 13874 | + | GH18 |
Gene ID: Rep_111_c_250_4
Type: TC
Location: 5476 - 8538 (+)
Type: TC
Location: 5476 - 8538 (+)
Gene ID: Rep_111_c_250_5
Type: TC
Location: 8558 - 10123 (+)
Type: TC
Location: 8558 - 10123 (+)
Gene ID: Rep_111_c_250_6
Type:
Location: 10150 - 11205 (+)
Type:
Location: 10150 - 11205 (+)
Gene ID: Rep_111_c_250_7
Type: pfam
Location: 11216 - 12433 (+)
Type: pfam
Location: 11216 - 12433 (+)
Gene ID: Rep_111_c_250_8
Type: CAZyme
Location: 12459 - 13874 (+)
Type: CAZyme
Location: 12459 - 13874 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.