Cluster: Rep_111_CGC15
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_111
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_111_c_234 | Rep_111_c_234_15 | 12133 | 14553 | - | GT51 |
| pfam | Rep_111_c_234 | Rep_111_c_234_16 | 14981 | 16267 | - | DUF2851 |
| CAZyme | Rep_111_c_234 | Rep_111_c_234_17 | 16274 | 20083 | - | GH31_18 |
| CAZyme | Rep_111_c_234 | Rep_111_c_234_18 | 20289 | 22007 | + | CBM50 |
| pfam | Rep_111_c_234 | Rep_111_c_234_19 | 22007 | 22684 | + | OMP_b-brl_2 |
| STP | Rep_111_c_234 | Rep_111_c_234_20 | 22703 | 23527 | + | Peripla_BP_2 |
| TC | Rep_111_c_234 | Rep_111_c_234_21 | 23528 | 24538 | + | 3.A.1.14.5 |
| TC | Rep_111_c_234 | Rep_111_c_234_22 | 24535 | 25320 | + | 3.A.1.14.3 |
Gene ID: Rep_111_c_234_15
Type: CAZyme
Location: 12133 - 14553 (-)
Type: CAZyme
Location: 12133 - 14553 (-)
Gene ID: Rep_111_c_234_16
Type: pfam
Location: 14981 - 16267 (-)
Type: pfam
Location: 14981 - 16267 (-)
Gene ID: Rep_111_c_234_17
Type: CAZyme
Location: 16274 - 20083 (-)
Type: CAZyme
Location: 16274 - 20083 (-)
Gene ID: Rep_111_c_234_18
Type: CAZyme
Location: 20289 - 22007 (+)
Type: CAZyme
Location: 20289 - 22007 (+)
Gene ID: Rep_111_c_234_19
Type: pfam
Location: 22007 - 22684 (+)
Type: pfam
Location: 22007 - 22684 (+)
Gene ID: Rep_111_c_234_20
Type: STP
Location: 22703 - 23527 (+)
Type: STP
Location: 22703 - 23527 (+)
Gene ID: Rep_111_c_234_21
Type: TC
Location: 23528 - 24538 (+)
Type: TC
Location: 23528 - 24538 (+)
Gene ID: Rep_111_c_234_22
Type: TC
Location: 24535 - 25320 (+)
Type: TC
Location: 24535 - 25320 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.