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Cluster: Rep_1119_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1119_c_14 Rep_1119_c_14_28 32557 33099 + 4.F.1.1.7
TC Rep_1119_c_14 Rep_1119_c_14_29 33112 33942 + 3.A.1.25.6
TC Rep_1119_c_14 Rep_1119_c_14_30 33918 34760 + 3.A.1.25.6
TC Rep_1119_c_14 Rep_1119_c_14_31 34753 35547 + 3.A.1.25.6
CAZyme Rep_1119_c_14 Rep_1119_c_14_32 35848 36420 + CBM50
CAZyme Rep_1119_c_14 Rep_1119_c_14_33 36604 37302 + GH23
NULL(UNKNOWN) Rep_1119_c_14 Rep_1119_c_14_34 37432 39141 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1119_c_14 Rep_1119_c_14_35 39285 40406 + NAD_synthase | tRNA_Me_trans | tRNA_Me_trans_C | tRNA_Me_trans_M
TC Rep_1119_c_14 Rep_1119_c_14_36 40426 41040 + 2.A.95.1.3
TC Rep_1119_c_14 Rep_1119_c_14_37 41220 43121 + 1.C.39.4.5
Gene ID: Rep_1119_c_14_28
Type: TC
Location: 32557 - 33099 (+)
Gene ID: Rep_1119_c_14_29
Type: TC
Location: 33112 - 33942 (+)
Gene ID: Rep_1119_c_14_30
Type: TC
Location: 33918 - 34760 (+)
Gene ID: Rep_1119_c_14_31
Type: TC
Location: 34753 - 35547 (+)
Gene ID: Rep_1119_c_14_32
Type: CAZyme
Location: 35848 - 36420 (+)
Gene ID: Rep_1119_c_14_33
Type: CAZyme
Location: 36604 - 37302 (+)
Gene ID: Rep_1119_c_14_34
Type:
Location: 37432 - 39141 (+)
Gene ID: Rep_1119_c_14_35
Type: pfam
Location: 39285 - 40406 (+)
Gene ID: Rep_1119_c_14_36
Type: TC
Location: 40426 - 41040 (+)
Gene ID: Rep_1119_c_14_37
Type: TC
Location: 41220 - 43121 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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