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Cluster: Rep_1106_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1106_c_9 Rep_1106_c_9_33 33266 34516 + 3.A.1.103.5
CAZyme Rep_1106_c_9 Rep_1106_c_9_34 34546 37662 + GT2
pfam Rep_1106_c_9 Rep_1106_c_9_35 37659 39236 + DUF2142
CAZyme Rep_1106_c_9 Rep_1106_c_9_36 39272 40516 + GT4
pfam Rep_1106_c_9 Rep_1106_c_9_37 40553 42448 + DUF2142
CAZyme Rep_1106_c_9 Rep_1106_c_9_38 42533 43249 + GT2
pfam Rep_1106_c_9 Rep_1106_c_9_39 43249 43605 + DUF2304
CAZyme Rep_1106_c_9 Rep_1106_c_9_40 43595 44371 + GT2
NULL(UNKNOWN) Rep_1106_c_9 Rep_1106_c_9_41 44384 45643 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1106_c_9 Rep_1106_c_9_42 45780 47759 + GH25
Gene ID: Rep_1106_c_9_33
Type: TC
Location: 33266 - 34516 (+)
Gene ID: Rep_1106_c_9_34
Type: CAZyme
Location: 34546 - 37662 (+)
Gene ID: Rep_1106_c_9_35
Type: pfam
Location: 37659 - 39236 (+)
Gene ID: Rep_1106_c_9_36
Type: CAZyme
Location: 39272 - 40516 (+)
Gene ID: Rep_1106_c_9_37
Type: pfam
Location: 40553 - 42448 (+)
Gene ID: Rep_1106_c_9_38
Type: CAZyme
Location: 42533 - 43249 (+)
Gene ID: Rep_1106_c_9_39
Type: pfam
Location: 43249 - 43605 (+)
Gene ID: Rep_1106_c_9_40
Type: CAZyme
Location: 43595 - 44371 (+)
Gene ID: Rep_1106_c_9_41
Type:
Location: 44384 - 45643 (+)
Gene ID: Rep_1106_c_9_42
Type: CAZyme
Location: 45780 - 47759 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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