Cluster: Rep_109_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_109
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_109_c_65 | Rep_109_c_65_4 | 3831 | 5090 | + | 9.A.40.2.4 |
| pfam | Rep_109_c_65 | Rep_109_c_65_5 | 5112 | 6863 | + | tRNA-synt_2 | tRNA_anti-codon | GAD |
| CAZyme | Rep_109_c_65 | Rep_109_c_65_6 | 6941 | 9436 | + | GH2 |
| TC | Rep_109_c_65 | Rep_109_c_65_7 | 9423 | 10175 | + | 9.B.158.1.1 |
| pfam | Rep_109_c_65 | Rep_109_c_65_8 | 10172 | 10897 | + | 2-ph_phosp |
| CAZyme | Rep_109_c_65 | Rep_109_c_65_9 | 10904 | 11908 | + | GH73 |
Gene ID: Rep_109_c_65_4
Type: TC
Location: 3831 - 5090 (+)
Type: TC
Location: 3831 - 5090 (+)
Gene ID: Rep_109_c_65_5
Type: pfam
Location: 5112 - 6863 (+)
Type: pfam
Location: 5112 - 6863 (+)
Gene ID: Rep_109_c_65_6
Type: CAZyme
Location: 6941 - 9436 (+)
Type: CAZyme
Location: 6941 - 9436 (+)
Gene ID: Rep_109_c_65_7
Type: TC
Location: 9423 - 10175 (+)
Type: TC
Location: 9423 - 10175 (+)
Gene ID: Rep_109_c_65_8
Type: pfam
Location: 10172 - 10897 (+)
Type: pfam
Location: 10172 - 10897 (+)
Gene ID: Rep_109_c_65_9
Type: CAZyme
Location: 10904 - 11908 (+)
Type: CAZyme
Location: 10904 - 11908 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp934359325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.