Cluster: Rep_109_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_109
- CGC Family ID: CGCFAM_06313
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_109_c_48 | Rep_109_c_48_2 | 1496 | 5311 | - | GH31_18 |
| CAZyme | Rep_109_c_48 | Rep_109_c_48_3 | 5566 | 7296 | + | CBM50 |
| pfam | Rep_109_c_48 | Rep_109_c_48_4 | 7296 | 7970 | + | OMP_b-brl_2 |
| STP | Rep_109_c_48 | Rep_109_c_48_5 | 7988 | 8812 | + | Peripla_BP_2 |
| TC | Rep_109_c_48 | Rep_109_c_48_6 | 8813 | 9823 | + | 3.A.1.14.5 |
| TC | Rep_109_c_48 | Rep_109_c_48_7 | 9820 | 10605 | + | 3.A.1.14.3 |
Gene ID: Rep_109_c_48_2
Type: CAZyme
Location: 1496 - 5311 (-)
Type: CAZyme
Location: 1496 - 5311 (-)
Gene ID: Rep_109_c_48_3
Type: CAZyme
Location: 5566 - 7296 (+)
Type: CAZyme
Location: 5566 - 7296 (+)
Gene ID: Rep_109_c_48_4
Type: pfam
Location: 7296 - 7970 (+)
Type: pfam
Location: 7296 - 7970 (+)
Gene ID: Rep_109_c_48_5
Type: STP
Location: 7988 - 8812 (+)
Type: STP
Location: 7988 - 8812 (+)
Gene ID: Rep_109_c_48_6
Type: TC
Location: 8813 - 9823 (+)
Type: TC
Location: 8813 - 9823 (+)
Gene ID: Rep_109_c_48_7
Type: TC
Location: 9820 - 10605 (+)
Type: TC
Location: 9820 - 10605 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp934359325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.