Cluster: Rep_109_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: pectin/alpha-glucan
- Genome ID: Rep_109
- CGC Family ID: CGCFAM_00025
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_109_c_9 | Rep_109_c_9_1 | 289 | 2415 | + | GH97 |
| TC | Rep_109_c_9 | Rep_109_c_9_2 | 2439 | 5453 | + | 1.B.14.6.1 |
| TC | Rep_109_c_9 | Rep_109_c_9_3 | 5469 | 6989 | + | 8.A.46.1.1 |
| pfam | Rep_109_c_9 | Rep_109_c_9_4 | 6986 | 8173 | + | SusE |
| CAZyme | Rep_109_c_9 | Rep_109_c_9_5 | 8258 | 10111 | + | GH13_46 |
Gene ID: Rep_109_c_9_1
Type: CAZyme
Location: 289 - 2415 (+)
Type: CAZyme
Location: 289 - 2415 (+)
Gene ID: Rep_109_c_9_2
Type: TC
Location: 2439 - 5453 (+)
Type: TC
Location: 2439 - 5453 (+)
Gene ID: Rep_109_c_9_3
Type: TC
Location: 5469 - 6989 (+)
Type: TC
Location: 5469 - 6989 (+)
Gene ID: Rep_109_c_9_4
Type: pfam
Location: 6986 - 8173 (+)
Type: pfam
Location: 6986 - 8173 (+)
Gene ID: Rep_109_c_9_5
Type: CAZyme
Location: 8258 - 10111 (+)
Type: CAZyme
Location: 8258 - 10111 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp934359325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.