Cluster: Rep_109_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_109
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_109_c_173 | Rep_109_c_173_2 | 1060 | 2103 | - | 2.A.4.7.9 |
| NULL(UNKNOWN) | Rep_109_c_173 | Rep_109_c_173_3 | 2082 | 2843 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_109_c_173 | Rep_109_c_173_4 | 2859 | 4259 | - | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| CAZyme | Rep_109_c_173 | Rep_109_c_173_5 | 4246 | 5382 | - | GT28 |
| TC | Rep_109_c_173 | Rep_109_c_173_6 | 5394 | 6779 | - | 2.A.103.1.3 |
Gene ID: Rep_109_c_173_2
Type: TC
Location: 1060 - 2103 (-)
Type: TC
Location: 1060 - 2103 (-)
Gene ID: Rep_109_c_173_3
Type:
Location: 2082 - 2843 (-)
Type:
Location: 2082 - 2843 (-)
Gene ID: Rep_109_c_173_4
Type: pfam
Location: 2859 - 4259 (-)
Type: pfam
Location: 2859 - 4259 (-)
Gene ID: Rep_109_c_173_5
Type: CAZyme
Location: 4246 - 5382 (-)
Type: CAZyme
Location: 4246 - 5382 (-)
Gene ID: Rep_109_c_173_6
Type: TC
Location: 5394 - 6779 (-)
Type: TC
Location: 5394 - 6779 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp934359325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.