Cluster: Rep_109_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_109
- CGC Family ID: CGCFAM_02968
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_109_c_131 | Rep_109_c_131_10 | 15249 | 16514 | + | 9.B.146.1.3 |
| pfam | Rep_109_c_131 | Rep_109_c_131_11 | 16521 | 17882 | + | Mur_ligase_C | Mur_ligase_M |
| NULL(UNKNOWN) | Rep_109_c_131 | Rep_109_c_131_12 | 17997 | 18839 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_109_c_131 | Rep_109_c_131_13 | 18836 | 19846 | - | GT2 |
Gene ID: Rep_109_c_131_10
Type: TC
Location: 15249 - 16514 (+)
Type: TC
Location: 15249 - 16514 (+)
Gene ID: Rep_109_c_131_11
Type: pfam
Location: 16521 - 17882 (+)
Type: pfam
Location: 16521 - 17882 (+)
Gene ID: Rep_109_c_131_12
Type:
Location: 17997 - 18839 (-)
Type:
Location: 17997 - 18839 (-)
Gene ID: Rep_109_c_131_13
Type: CAZyme
Location: 18836 - 19846 (-)
Type: CAZyme
Location: 18836 - 19846 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp934359325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.