Cluster: Rep_109_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_109
- CGC Family ID: CGCFAM_06396
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_109_c_123 | Rep_109_c_123_2 | 550 | 3681 | + | 1.B.14.6.1 |
| pfam | Rep_109_c_123 | Rep_109_c_123_3 | 3694 | 5622 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_109_c_123 | Rep_109_c_123_4 | 5640 | 6947 | + | CBM32 |
| CAZyme | Rep_109_c_123 | Rep_109_c_123_5 | 7030 | 9828 | + | CBM32 |
| pfam | Rep_109_c_123 | Rep_109_c_123_6 | 10176 | 11069 | + | EamA | EamA |
| TC | Rep_109_c_123 | Rep_109_c_123_7 | 11128 | 14088 | + | 1.B.42.1.8 |
Gene ID: Rep_109_c_123_2
Type: TC
Location: 550 - 3681 (+)
Type: TC
Location: 550 - 3681 (+)
Gene ID: Rep_109_c_123_3
Type: pfam
Location: 3694 - 5622 (+)
Type: pfam
Location: 3694 - 5622 (+)
Gene ID: Rep_109_c_123_4
Type: CAZyme
Location: 5640 - 6947 (+)
Type: CAZyme
Location: 5640 - 6947 (+)
Gene ID: Rep_109_c_123_5
Type: CAZyme
Location: 7030 - 9828 (+)
Type: CAZyme
Location: 7030 - 9828 (+)
Gene ID: Rep_109_c_123_6
Type: pfam
Location: 10176 - 11069 (+)
Type: pfam
Location: 10176 - 11069 (+)
Gene ID: Rep_109_c_123_7
Type: TC
Location: 11128 - 14088 (+)
Type: TC
Location: 11128 - 14088 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp934359325
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.