Cluster: Rep_108_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_108
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_108_c_0 | Rep_108_c_0_107 | 142182 | 143867 | - | GH13_38 |
| TC | Rep_108_c_0 | Rep_108_c_0_108 | 144047 | 145258 | - | 1.B.6.1.6 |
| NULL(UNKNOWN) | Rep_108_c_0 | Rep_108_c_0_109 | 145465 | 145947 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_108_c_0 | Rep_108_c_0_110 | 146107 | 147441 | + | UPF0004 | TRAM | Radical_SAM |
| CAZyme | Rep_108_c_0 | Rep_108_c_0_111 | 147500 | 149608 | + | CE20 |
Gene ID: Rep_108_c_0_107
Type: CAZyme
Location: 142182 - 143867 (-)
Type: CAZyme
Location: 142182 - 143867 (-)
Gene ID: Rep_108_c_0_108
Type: TC
Location: 144047 - 145258 (-)
Type: TC
Location: 144047 - 145258 (-)
Gene ID: Rep_108_c_0_109
Type:
Location: 145465 - 145947 (-)
Type:
Location: 145465 - 145947 (-)
Gene ID: Rep_108_c_0_110
Type: pfam
Location: 146107 - 147441 (+)
Type: pfam
Location: 146107 - 147441 (+)
Gene ID: Rep_108_c_0_111
Type: CAZyme
Location: 147500 - 149608 (+)
Type: CAZyme
Location: 147500 - 149608 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A bennonis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.