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Cluster: Rep_1089_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1089_c_30 Rep_1089_c_30_52 41219 42814 - 3.A.1.121.4
peptidase Rep_1089_c_30 Rep_1089_c_30_53 42849 44138 - M20.UPC
CAZyme Rep_1089_c_30 Rep_1089_c_30_54 44164 45519 - GT2
TC Rep_1089_c_30 Rep_1089_c_30_55 45567 47978 - 8.A.7.1.3
pfam Rep_1089_c_30 Rep_1089_c_30_56 48078 49148 + LpxR | LpxR
TC Rep_1089_c_30 Rep_1089_c_30_57 49145 50038 - 1.B.65.1.5
NULL(UNKNOWN) Rep_1089_c_30 Rep_1089_c_30_58 50035 50211 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1089_c_30 Rep_1089_c_30_59 50220 51026 - 3.A.1.15.1
NULL(UNKNOWN) Rep_1089_c_30 Rep_1089_c_30_60 51084 52247 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1089_c_30 Rep_1089_c_30_61 52244 54115 - 1.A.33.1.2
Gene ID: Rep_1089_c_30_52
Type: TC
Location: 41219 - 42814 (-)
Gene ID: Rep_1089_c_30_53
Type: peptidase
Location: 42849 - 44138 (-)
Gene ID: Rep_1089_c_30_54
Type: CAZyme
Location: 44164 - 45519 (-)
Gene ID: Rep_1089_c_30_55
Type: TC
Location: 45567 - 47978 (-)
Gene ID: Rep_1089_c_30_56
Type: pfam
Location: 48078 - 49148 (+)
Gene ID: Rep_1089_c_30_57
Type: TC
Location: 49145 - 50038 (-)
Gene ID: Rep_1089_c_30_58
Type:
Location: 50035 - 50211 (-)
Gene ID: Rep_1089_c_30_59
Type: TC
Location: 50220 - 51026 (-)
Gene ID: Rep_1089_c_30_60
Type:
Location: 51084 - 52247 (-)
Gene ID: Rep_1089_c_30_61
Type: TC
Location: 52244 - 54115 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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