Cluster: Rep_1087_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1087
- CGC Family ID: CGCFAM_03070
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1087_c_45 | Rep_1087_c_45_2 | 1355 | 3151 | - | GT4 |
| NULL(UNKNOWN) | Rep_1087_c_45 | Rep_1087_c_45_3 | 3250 | 3726 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_1087_c_45 | Rep_1087_c_45_4 | 3731 | 4510 | + | PHP |
| TC | Rep_1087_c_45 | Rep_1087_c_45_5 | 4754 | 8104 | + | 3.A.12.1.1 |
Gene ID: Rep_1087_c_45_2
Type: CAZyme
Location: 1355 - 3151 (-)
Type: CAZyme
Location: 1355 - 3151 (-)
Gene ID: Rep_1087_c_45_3
Type:
Location: 3250 - 3726 (+)
Type:
Location: 3250 - 3726 (+)
Gene ID: Rep_1087_c_45_4
Type: pfam
Location: 3731 - 4510 (+)
Type: pfam
Location: 3731 - 4510 (+)
Gene ID: Rep_1087_c_45_5
Type: TC
Location: 4754 - 8104 (+)
Type: TC
Location: 4754 - 8104 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Campylobacterota
Class
Campylobacteria
Order
Campylobacterales
Family
Helicobacteraceae
Genus
Helicobacter_D
Species
Helicobacter_D winghamensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.