Cluster: Rep_1022_CGC7
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_1022
- CGC Family ID: CGCFAM_04776
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1022_c_0 | Rep_1022_c_0_749 | 747102 | 748529 | - | 2.A.66.2.16 |
| STP | Rep_1022_c_0 | Rep_1022_c_0_750 | 748535 | 749650 | - | Pyr_redox |
| CAZyme | Rep_1022_c_0 | Rep_1022_c_0_751 | 749643 | 750374 | - | GT113 |
| NULL(UNKNOWN) | Rep_1022_c_0 | Rep_1022_c_0_752 | 750371 | 750682 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1022_c_0 | Rep_1022_c_0_753 | 750699 | 751706 | - | GT2 |
| NULL(UNKNOWN) | Rep_1022_c_0 | Rep_1022_c_0_754 | 751699 | 752931 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1022_c_0 | Rep_1022_c_0_755 | 752940 | 754076 | - | GT4 |
| pfam | Rep_1022_c_0 | Rep_1022_c_0_756 | 754096 | 754662 | - | Hexapep |
| CAZyme | Rep_1022_c_0 | Rep_1022_c_0_757 | 754637 | 755710 | - | GT4 |
| CAZyme | Rep_1022_c_0 | Rep_1022_c_0_758 | 755712 | 756206 | - | GT1 |
| pfam | Rep_1022_c_0 | Rep_1022_c_0_759 | 756217 | 756666 | - | Alg14 |
| TC | Rep_1022_c_0 | Rep_1022_c_0_760 | 756684 | 757343 | - | 9.B.18.1.2 |
| pfam | Rep_1022_c_0 | Rep_1022_c_0_761 | 757368 | 758138 | - | CpsB_CapC |
| TC | Rep_1022_c_0 | Rep_1022_c_0_762 | 758144 | 758893 | - | 8.A.3.1.2 |
| TC | Rep_1022_c_0 | Rep_1022_c_0_763 | 758905 | 759765 | - | 8.A.3.2.4 |
Gene ID: Rep_1022_c_0_749
Type: TC
Location: 747102 - 748529 (-)
Type: TC
Location: 747102 - 748529 (-)
Gene ID: Rep_1022_c_0_750
Type: STP
Location: 748535 - 749650 (-)
Type: STP
Location: 748535 - 749650 (-)
Gene ID: Rep_1022_c_0_751
Type: CAZyme
Location: 749643 - 750374 (-)
Type: CAZyme
Location: 749643 - 750374 (-)
Gene ID: Rep_1022_c_0_752
Type:
Location: 750371 - 750682 (-)
Type:
Location: 750371 - 750682 (-)
Gene ID: Rep_1022_c_0_753
Type: CAZyme
Location: 750699 - 751706 (-)
Type: CAZyme
Location: 750699 - 751706 (-)
Gene ID: Rep_1022_c_0_754
Type:
Location: 751699 - 752931 (-)
Type:
Location: 751699 - 752931 (-)
Gene ID: Rep_1022_c_0_755
Type: CAZyme
Location: 752940 - 754076 (-)
Type: CAZyme
Location: 752940 - 754076 (-)
Gene ID: Rep_1022_c_0_756
Type: pfam
Location: 754096 - 754662 (-)
Type: pfam
Location: 754096 - 754662 (-)
Gene ID: Rep_1022_c_0_757
Type: CAZyme
Location: 754637 - 755710 (-)
Type: CAZyme
Location: 754637 - 755710 (-)
Gene ID: Rep_1022_c_0_758
Type: CAZyme
Location: 755712 - 756206 (-)
Type: CAZyme
Location: 755712 - 756206 (-)
Gene ID: Rep_1022_c_0_759
Type: pfam
Location: 756217 - 756666 (-)
Type: pfam
Location: 756217 - 756666 (-)
Gene ID: Rep_1022_c_0_760
Type: TC
Location: 756684 - 757343 (-)
Type: TC
Location: 756684 - 757343 (-)
Gene ID: Rep_1022_c_0_761
Type: pfam
Location: 757368 - 758138 (-)
Type: pfam
Location: 757368 - 758138 (-)
Gene ID: Rep_1022_c_0_762
Type: TC
Location: 758144 - 758893 (-)
Type: TC
Location: 758144 - 758893 (-)
Gene ID: Rep_1022_c_0_763
Type: TC
Location: 758905 - 759765 (-)
Type: TC
Location: 758905 - 759765 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus paragasseri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.