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Cluster: Rep_1022_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1022_c_1 Rep_1022_c_1_283 326260 327708 - GH1
NULL(UNKNOWN) Rep_1022_c_1 Rep_1022_c_1_284 327907 328404 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1022_c_1 Rep_1022_c_1_285 328427 329779 + 4.A.3.2.2
TF Rep_1022_c_1 Rep_1022_c_1_286 329855 330553 + GntR
CAZyme Rep_1022_c_1 Rep_1022_c_1_287 331077 332564 - GH1
TF Rep_1022_c_1 Rep_1022_c_1_288 332631 333356 - GntR
TC Rep_1022_c_1 Rep_1022_c_1_289 333356 333682 - 4.A.3.2.4
NULL(UNKNOWN) Rep_1022_c_1 Rep_1022_c_1_290 333771 334019 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1022_c_1 Rep_1022_c_1_291 334025 334348 - 4.A.3.2.4
TC Rep_1022_c_1 Rep_1022_c_1_292 334495 335925 - 4.A.3.2.2
CAZyme Rep_1022_c_1 Rep_1022_c_1_293 335925 337304 - GH1
Gene ID: Rep_1022_c_1_283
Type: CAZyme
Location: 326260 - 327708 (-)
Gene ID: Rep_1022_c_1_284
Type:
Location: 327907 - 328404 (+)
Gene ID: Rep_1022_c_1_285
Type: TC
Location: 328427 - 329779 (+)
Gene ID: Rep_1022_c_1_286
Type: TF
Location: 329855 - 330553 (+)
Gene ID: Rep_1022_c_1_287
Type: CAZyme
Location: 331077 - 332564 (-)
Gene ID: Rep_1022_c_1_288
Type: TF
Location: 332631 - 333356 (-)
Gene ID: Rep_1022_c_1_289
Type: TC
Location: 333356 - 333682 (-)
Gene ID: Rep_1022_c_1_290
Type:
Location: 333771 - 334019 (-)
Gene ID: Rep_1022_c_1_291
Type: TC
Location: 334025 - 334348 (-)
Gene ID: Rep_1022_c_1_292
Type: TC
Location: 334495 - 335925 (-)
Gene ID: Rep_1022_c_1_293
Type: CAZyme
Location: 335925 - 337304 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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