Cluster: Rep_1022_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1022
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1022_c_1 | Rep_1022_c_1_268 | 310143 | 311075 | + | GT2 |
| NULL(UNKNOWN) | Rep_1022_c_1 | Rep_1022_c_1_269 | 311178 | 311891 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1022_c_1 | Rep_1022_c_1_270 | 311964 | 312827 | + | 2.A.7.5.2 |
| pfam | Rep_1022_c_1 | Rep_1022_c_1_271 | 313112 | 313993 | + | Aldose_epim |
| pfam | Rep_1022_c_1 | Rep_1022_c_1_272 | 314126 | 315235 | + | LytR_cpsA_psr |
| TC | Rep_1022_c_1 | Rep_1022_c_1_273 | 315235 | 315855 | + | 9.B.31.1.2 |
Gene ID: Rep_1022_c_1_268
Type: CAZyme
Location: 310143 - 311075 (+)
Type: CAZyme
Location: 310143 - 311075 (+)
Gene ID: Rep_1022_c_1_269
Type:
Location: 311178 - 311891 (+)
Type:
Location: 311178 - 311891 (+)
Gene ID: Rep_1022_c_1_270
Type: TC
Location: 311964 - 312827 (+)
Type: TC
Location: 311964 - 312827 (+)
Gene ID: Rep_1022_c_1_271
Type: pfam
Location: 313112 - 313993 (+)
Type: pfam
Location: 313112 - 313993 (+)
Gene ID: Rep_1022_c_1_272
Type: pfam
Location: 314126 - 315235 (+)
Type: pfam
Location: 314126 - 315235 (+)
Gene ID: Rep_1022_c_1_273
Type: TC
Location: 315235 - 315855 (+)
Type: TC
Location: 315235 - 315855 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus paragasseri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.