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Cluster: Rep_1022_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1022_c_1 Rep_1022_c_1_174 198343 199650 + GT2
CAZyme Rep_1022_c_1 Rep_1022_c_1_175 199660 200778 + GH8
pfam Rep_1022_c_1 Rep_1022_c_1_176 200893 201537 + YfbR-like | HD_3
pfam Rep_1022_c_1 Rep_1022_c_1_177 201605 202468 + HNH | HNH_4
TC Rep_1022_c_1 Rep_1022_c_1_178 202512 203270 - 3.A.1.3.20
TC Rep_1022_c_1 Rep_1022_c_1_179 203260 204873 - 3.A.1.3.20
pfam Rep_1022_c_1 Rep_1022_c_1_180 205210 205836 - Pur_DNA_glyco
pfam Rep_1022_c_1 Rep_1022_c_1_181 205911 206273 + DUF488 | DUF488-N3a | DUF488-N3i
TC Rep_1022_c_1 Rep_1022_c_1_182 206270 207052 - 2.A.109.1.3
Gene ID: Rep_1022_c_1_174
Type: CAZyme
Location: 198343 - 199650 (+)
Gene ID: Rep_1022_c_1_175
Type: CAZyme
Location: 199660 - 200778 (+)
Gene ID: Rep_1022_c_1_176
Type: pfam
Location: 200893 - 201537 (+)
Gene ID: Rep_1022_c_1_177
Type: pfam
Location: 201605 - 202468 (+)
Gene ID: Rep_1022_c_1_178
Type: TC
Location: 202512 - 203270 (-)
Gene ID: Rep_1022_c_1_179
Type: TC
Location: 203260 - 204873 (-)
Gene ID: Rep_1022_c_1_180
Type: pfam
Location: 205210 - 205836 (-)
Gene ID: Rep_1022_c_1_181
Type: pfam
Location: 205911 - 206273 (+)
Gene ID: Rep_1022_c_1_182
Type: TC
Location: 206270 - 207052 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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