Cluster: Rep_1022_CGC10
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_1022
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1022_c_0 | Rep_1022_c_0_1108 | 1107619 | 1108245 | - | GH73 |
| TC | Rep_1022_c_0 | Rep_1022_c_0_1109 | 1108247 | 1108864 | - | 2.A.87.2.1 |
| pfam | Rep_1022_c_0 | Rep_1022_c_0_1110 | 1109081 | 1109539 | - | SprT-like | Zn_ribbon_SprT |
| CAZyme | Rep_1022_c_0 | Rep_1022_c_0_1111 | 1109539 | 1110240 | - | GT32 |
| TC | Rep_1022_c_0 | Rep_1022_c_0_1112 | 1110237 | 1111673 | - | 2.A.66.2.16 |
| pfam | Rep_1022_c_0 | Rep_1022_c_0_1113 | 1111685 | 1112833 | - | Glyphos_transf |
| TF | Rep_1022_c_0 | Rep_1022_c_0_1114 | 1113063 | 1113869 | + | HTH_3 |
| TC | Rep_1022_c_0 | Rep_1022_c_0_1115 | 1113972 | 1115540 | + | 3.A.1.106.15 |
| TC | Rep_1022_c_0 | Rep_1022_c_0_1116 | 1115628 | 1118303 | - | 3.A.3.2.28 |
| pfam | Rep_1022_c_0 | Rep_1022_c_0_1117 | 1118475 | 1119308 | - | NAD_synthase |
| pfam | Rep_1022_c_0 | Rep_1022_c_0_1118 | 1119310 | 1120782 | - | QRPTase_N | NAPRTase | NAPRTase_N | NAPRTase_C |
| CAZyme | Rep_1022_c_0 | Rep_1022_c_0_1119 | 1120894 | 1122867 | - | GT2 |
| CAZyme | Rep_1022_c_0 | Rep_1022_c_0_1120 | 1122867 | 1123967 | - | GT4 |
| CAZyme | Rep_1022_c_0 | Rep_1022_c_0_1121 | 1123987 | 1124715 | - | GT26 |
Gene ID: Rep_1022_c_0_1108
Type: CAZyme
Location: 1107619 - 1108245 (-)
Type: CAZyme
Location: 1107619 - 1108245 (-)
Gene ID: Rep_1022_c_0_1109
Type: TC
Location: 1108247 - 1108864 (-)
Type: TC
Location: 1108247 - 1108864 (-)
Gene ID: Rep_1022_c_0_1110
Type: pfam
Location: 1109081 - 1109539 (-)
Type: pfam
Location: 1109081 - 1109539 (-)
Gene ID: Rep_1022_c_0_1111
Type: CAZyme
Location: 1109539 - 1110240 (-)
Type: CAZyme
Location: 1109539 - 1110240 (-)
Gene ID: Rep_1022_c_0_1112
Type: TC
Location: 1110237 - 1111673 (-)
Type: TC
Location: 1110237 - 1111673 (-)
Gene ID: Rep_1022_c_0_1113
Type: pfam
Location: 1111685 - 1112833 (-)
Type: pfam
Location: 1111685 - 1112833 (-)
Gene ID: Rep_1022_c_0_1114
Type: TF
Location: 1113063 - 1113869 (+)
Type: TF
Location: 1113063 - 1113869 (+)
Gene ID: Rep_1022_c_0_1115
Type: TC
Location: 1113972 - 1115540 (+)
Type: TC
Location: 1113972 - 1115540 (+)
Gene ID: Rep_1022_c_0_1116
Type: TC
Location: 1115628 - 1118303 (-)
Type: TC
Location: 1115628 - 1118303 (-)
Gene ID: Rep_1022_c_0_1117
Type: pfam
Location: 1118475 - 1119308 (-)
Type: pfam
Location: 1118475 - 1119308 (-)
Gene ID: Rep_1022_c_0_1118
Type: pfam
Location: 1119310 - 1120782 (-)
Type: pfam
Location: 1119310 - 1120782 (-)
Gene ID: Rep_1022_c_0_1119
Type: CAZyme
Location: 1120894 - 1122867 (-)
Type: CAZyme
Location: 1120894 - 1122867 (-)
Gene ID: Rep_1022_c_0_1120
Type: CAZyme
Location: 1122867 - 1123967 (-)
Type: CAZyme
Location: 1122867 - 1123967 (-)
Gene ID: Rep_1022_c_0_1121
Type: CAZyme
Location: 1123987 - 1124715 (-)
Type: CAZyme
Location: 1123987 - 1124715 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus paragasseri
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.