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Cluster: Rep_1022_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1022_c_0 Rep_1022_c_0_45 42116 43534 + 4.A.5.1.6
NULL(UNKNOWN) Rep_1022_c_0 Rep_1022_c_0_46 43572 43820 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1022_c_0 Rep_1022_c_0_47 44125 44964 + PRD | PRD | CAT_RBD
TC Rep_1022_c_0 Rep_1022_c_0_48 44976 45332 + 4.A.3.1.3
TC Rep_1022_c_0 Rep_1022_c_0_49 45383 47080 + 4.A.3.1.3
CAZyme Rep_1022_c_0 Rep_1022_c_0_50 47096 48523 + GH1
TF Rep_1022_c_0 Rep_1022_c_0_51 48661 49545 - HTH_1
pfam Rep_1022_c_0 Rep_1022_c_0_52 49756 51549 + FAD_binding_2 | FMN_bind
TC Rep_1022_c_0 Rep_1022_c_0_53 51576 52991 + 2.A.47.3.4
pfam Rep_1022_c_0 Rep_1022_c_0_54 53119 54039 + Glutaminase
TF Rep_1022_c_0 Rep_1022_c_0_55 54228 55076 + HTH_6
CAZyme Rep_1022_c_0 Rep_1022_c_0_56 55228 56631 + GH1
TC Rep_1022_c_0 Rep_1022_c_0_57 56644 57426 + 4.A.3.2.8
TC Rep_1022_c_0 Rep_1022_c_0_58 57447 57935 + 4.A.3.2.2
CAZyme Rep_1022_c_0 Rep_1022_c_0_59 58222 60756 + GH42
TC Rep_1022_c_0 Rep_1022_c_0_60 60759 62198 + 2.A.2.3.1
peptidase Rep_1022_c_0 Rep_1022_c_0_61 62211 63050 + S09.UPW
CAZyme Rep_1022_c_0 Rep_1022_c_0_62 63047 64000 + CE7
TF Rep_1022_c_0 Rep_1022_c_0_63 64047 64871 + HTH_AraC | HTH_AraC
CAZyme Rep_1022_c_0 Rep_1022_c_0_64 64940 66631 + PL4_4
TC Rep_1022_c_0 Rep_1022_c_0_65 66624 68195 + 2.A.2.5.1
TC Rep_1022_c_0 Rep_1022_c_0_66 68700 69320 + 9.B.105.2.2
peptidase Rep_1022_c_0 Rep_1022_c_0_67 69411 70766 - C45.UPW
peptidase Rep_1022_c_0 Rep_1022_c_0_68 70863 72188 - C01.086
TC Rep_1022_c_0 Rep_1022_c_0_69 72223 73869 - 2.A.3.7.5
TC Rep_1022_c_0 Rep_1022_c_0_70 74407 75777 + 2.A.3.6.1
peptidase Rep_1022_c_0 Rep_1022_c_0_71 75986 77686 - M38.UNW
pfam Rep_1022_c_0 Rep_1022_c_0_72 77751 78800 - SBP_bac_1 | SBP_bac_6 | SBP_bac_8 | SBP_bac_11
TC Rep_1022_c_0 Rep_1022_c_0_73 78829 79872 - 3.A.1.20.1
TC Rep_1022_c_0 Rep_1022_c_0_74 79883 80671 - 3.A.1.11.6
TC Rep_1022_c_0 Rep_1022_c_0_75 80664 81494 - 3.A.1.11.2
pfam Rep_1022_c_0 Rep_1022_c_0_76 81817 82737 - PDDEXK_2
TC Rep_1022_c_0 Rep_1022_c_0_77 82922 84571 - 2.A.3.7.2
TC Rep_1022_c_0 Rep_1022_c_0_78 84762 85973 - 2.A.1.2.20
Gene ID: Rep_1022_c_0_45
Type: TC
Location: 42116 - 43534 (+)
Gene ID: Rep_1022_c_0_46
Type:
Location: 43572 - 43820 (+)
Gene ID: Rep_1022_c_0_47
Type: pfam
Location: 44125 - 44964 (+)
Gene ID: Rep_1022_c_0_48
Type: TC
Location: 44976 - 45332 (+)
Gene ID: Rep_1022_c_0_49
Type: TC
Location: 45383 - 47080 (+)
Gene ID: Rep_1022_c_0_50
Type: CAZyme
Location: 47096 - 48523 (+)
Gene ID: Rep_1022_c_0_51
Type: TF
Location: 48661 - 49545 (-)
Gene ID: Rep_1022_c_0_52
Type: pfam
Location: 49756 - 51549 (+)
Gene ID: Rep_1022_c_0_53
Type: TC
Location: 51576 - 52991 (+)
Gene ID: Rep_1022_c_0_54
Type: pfam
Location: 53119 - 54039 (+)
Gene ID: Rep_1022_c_0_55
Type: TF
Location: 54228 - 55076 (+)
Gene ID: Rep_1022_c_0_56
Type: CAZyme
Location: 55228 - 56631 (+)
Gene ID: Rep_1022_c_0_57
Type: TC
Location: 56644 - 57426 (+)
Gene ID: Rep_1022_c_0_58
Type: TC
Location: 57447 - 57935 (+)
Gene ID: Rep_1022_c_0_59
Type: CAZyme
Location: 58222 - 60756 (+)
Gene ID: Rep_1022_c_0_60
Type: TC
Location: 60759 - 62198 (+)
Gene ID: Rep_1022_c_0_61
Type: peptidase
Location: 62211 - 63050 (+)
Gene ID: Rep_1022_c_0_62
Type: CAZyme
Location: 63047 - 64000 (+)
Gene ID: Rep_1022_c_0_63
Type: TF
Location: 64047 - 64871 (+)
Gene ID: Rep_1022_c_0_64
Type: CAZyme
Location: 64940 - 66631 (+)
Gene ID: Rep_1022_c_0_65
Type: TC
Location: 66624 - 68195 (+)
Gene ID: Rep_1022_c_0_66
Type: TC
Location: 68700 - 69320 (+)
Gene ID: Rep_1022_c_0_67
Type: peptidase
Location: 69411 - 70766 (-)
Gene ID: Rep_1022_c_0_68
Type: peptidase
Location: 70863 - 72188 (-)
Gene ID: Rep_1022_c_0_69
Type: TC
Location: 72223 - 73869 (-)
Gene ID: Rep_1022_c_0_70
Type: TC
Location: 74407 - 75777 (+)
Gene ID: Rep_1022_c_0_71
Type: peptidase
Location: 75986 - 77686 (-)
Gene ID: Rep_1022_c_0_72
Type: pfam
Location: 77751 - 78800 (-)
Gene ID: Rep_1022_c_0_73
Type: TC
Location: 78829 - 79872 (-)
Gene ID: Rep_1022_c_0_74
Type: TC
Location: 79883 - 80671 (-)
Gene ID: Rep_1022_c_0_75
Type: TC
Location: 80664 - 81494 (-)
Gene ID: Rep_1022_c_0_76
Type: pfam
Location: 81817 - 82737 (-)
Gene ID: Rep_1022_c_0_77
Type: TC
Location: 82922 - 84571 (-)
Gene ID: Rep_1022_c_0_78
Type: TC
Location: 84762 - 85973 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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