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Cluster: Rep_1021_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1021_c_1 Rep_1021_c_1_49 49407 50714 + GT2
CAZyme Rep_1021_c_1 Rep_1021_c_1_50 50724 51848 + GH8
pfam Rep_1021_c_1 Rep_1021_c_1_51 51963 52607 + YfbR-like | HD_3
pfam Rep_1021_c_1 Rep_1021_c_1_52 52675 53538 + HNH | HNH_4
TC Rep_1021_c_1 Rep_1021_c_1_53 54137 54895 - 3.A.1.3.20
TC Rep_1021_c_1 Rep_1021_c_1_54 54885 56498 - 3.A.1.3.20
pfam Rep_1021_c_1 Rep_1021_c_1_55 56834 57460 - Pur_DNA_glyco
pfam Rep_1021_c_1 Rep_1021_c_1_56 57536 57898 + DUF488 | DUF488-N3a | DUF488-N3i
TC Rep_1021_c_1 Rep_1021_c_1_57 57895 58677 - 2.A.109.1.3
Gene ID: Rep_1021_c_1_49
Type: CAZyme
Location: 49407 - 50714 (+)
Gene ID: Rep_1021_c_1_50
Type: CAZyme
Location: 50724 - 51848 (+)
Gene ID: Rep_1021_c_1_51
Type: pfam
Location: 51963 - 52607 (+)
Gene ID: Rep_1021_c_1_52
Type: pfam
Location: 52675 - 53538 (+)
Gene ID: Rep_1021_c_1_53
Type: TC
Location: 54137 - 54895 (-)
Gene ID: Rep_1021_c_1_54
Type: TC
Location: 54885 - 56498 (-)
Gene ID: Rep_1021_c_1_55
Type: pfam
Location: 56834 - 57460 (-)
Gene ID: Rep_1021_c_1_56
Type: pfam
Location: 57536 - 57898 (+)
Gene ID: Rep_1021_c_1_57
Type: TC
Location: 57895 - 58677 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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