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Cluster: Rep_1004_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1004_c_30 Rep_1004_c_30_43 43320 44093 - GT2
CAZyme Rep_1004_c_30 Rep_1004_c_30_44 44094 45371 - GT30
CAZyme Rep_1004_c_30 Rep_1004_c_30_45 45497 46510 + GT9
CAZyme Rep_1004_c_30 Rep_1004_c_30_46 46555 47655 - GT4
CAZyme Rep_1004_c_30 Rep_1004_c_30_47 47658 48785 - GT4
CAZyme Rep_1004_c_30 Rep_1004_c_30_48 48782 49783 - GT9
NULL(UNKNOWN) Rep_1004_c_30 Rep_1004_c_30_49 50075 51031 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1004_c_30 Rep_1004_c_30_50 51040 52134 + GT9
CAZyme Rep_1004_c_30 Rep_1004_c_30_51 52171 53148 - GT2
TC Rep_1004_c_30 Rep_1004_c_30_52 53145 54386 - 9.B.67.5.1
CAZyme Rep_1004_c_30 Rep_1004_c_30_53 54415 55581 - GT4
CAZyme Rep_1004_c_30 Rep_1004_c_30_54 55578 56543 - GT9
CAZyme Rep_1004_c_30 Rep_1004_c_30_55 56546 57592 - GT9
Gene ID: Rep_1004_c_30_43
Type: CAZyme
Location: 43320 - 44093 (-)
Gene ID: Rep_1004_c_30_44
Type: CAZyme
Location: 44094 - 45371 (-)
Gene ID: Rep_1004_c_30_45
Type: CAZyme
Location: 45497 - 46510 (+)
Gene ID: Rep_1004_c_30_46
Type: CAZyme
Location: 46555 - 47655 (-)
Gene ID: Rep_1004_c_30_47
Type: CAZyme
Location: 47658 - 48785 (-)
Gene ID: Rep_1004_c_30_48
Type: CAZyme
Location: 48782 - 49783 (-)
Gene ID: Rep_1004_c_30_49
Type:
Location: 50075 - 51031 (+)
Gene ID: Rep_1004_c_30_50
Type: CAZyme
Location: 51040 - 52134 (+)
Gene ID: Rep_1004_c_30_51
Type: CAZyme
Location: 52171 - 53148 (-)
Gene ID: Rep_1004_c_30_52
Type: TC
Location: 53145 - 54386 (-)
Gene ID: Rep_1004_c_30_53
Type: CAZyme
Location: 54415 - 55581 (-)
Gene ID: Rep_1004_c_30_54
Type: CAZyme
Location: 55578 - 56543 (-)
Gene ID: Rep_1004_c_30_55
Type: CAZyme
Location: 56546 - 57592 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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