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Cluster: Rep_1004_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1004_c_27 Rep_1004_c_27_630 680040 681095 + 3.A.1.5.38
TC Rep_1004_c_27 Rep_1004_c_27_631 681092 681961 + 3.A.1.5.38
TC Rep_1004_c_27 Rep_1004_c_27_632 681951 682793 + 3.A.1.5.2
TC Rep_1004_c_27 Rep_1004_c_27_633 682790 683461 + 3.A.1.5.1
TC Rep_1004_c_27 Rep_1004_c_27_634 683594 685168 + 3.A.1.5.39
TC Rep_1004_c_27 Rep_1004_c_27_635 685481 686239 - 3.A.15.2.1
TC Rep_1004_c_27 Rep_1004_c_27_636 686669 688180 + 1.B.54.1.9
TF Rep_1004_c_27 Rep_1004_c_27_637 688177 688800 - GerE
STP Rep_1004_c_27 Rep_1004_c_27_638 688811 690595 - HATPase_c
TC Rep_1004_c_27 Rep_1004_c_27_639 690946 692340 + 2.A.1.8.1
NULL(UNKNOWN) Rep_1004_c_27 Rep_1004_c_27_640 693646 694011 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1004_c_27 Rep_1004_c_27_641 694192 695154 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | NAD_binding_10 | GDP_Man_Dehyd
TC Rep_1004_c_27 Rep_1004_c_27_642 695329 696378 + 9.B.146.1.7
TC Rep_1004_c_27 Rep_1004_c_27_643 696448 697557 + 1.B.18.3.1
TC Rep_1004_c_27 Rep_1004_c_27_644 697585 699765 + 8.A.3.3.2
TC Rep_1004_c_27 Rep_1004_c_27_645 699770 701068 + 2.A.66.5.2
pfam Rep_1004_c_27 Rep_1004_c_27_646 701049 701897 + ATPgrasp_TupA
NULL(UNKNOWN) Rep_1004_c_27 Rep_1004_c_27_647 701904 703058 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1004_c_27 Rep_1004_c_27_648 703062 703967 + GT2
CAZyme Rep_1004_c_27 Rep_1004_c_27_649 703969 705024 + GT4
CAZyme Rep_1004_c_27 Rep_1004_c_27_650 705032 705775 + GT2
NULL(UNKNOWN) Rep_1004_c_27 Rep_1004_c_27_651 705778 707646 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1004_c_27 Rep_1004_c_27_652 707939 711700 + 5.A.3.1.1
TC Rep_1004_c_27 Rep_1004_c_27_653 711697 713241 + 5.A.3.1.1
pfam Rep_1004_c_27 Rep_1004_c_27_654 713238 713960 + Nitrate_red_del
TC Rep_1004_c_27 Rep_1004_c_27_655 713963 714640 + 5.A.3.1.1
Gene ID: Rep_1004_c_27_630
Type: TC
Location: 680040 - 681095 (+)
Gene ID: Rep_1004_c_27_631
Type: TC
Location: 681092 - 681961 (+)
Gene ID: Rep_1004_c_27_632
Type: TC
Location: 681951 - 682793 (+)
Gene ID: Rep_1004_c_27_633
Type: TC
Location: 682790 - 683461 (+)
Gene ID: Rep_1004_c_27_634
Type: TC
Location: 683594 - 685168 (+)
Gene ID: Rep_1004_c_27_635
Type: TC
Location: 685481 - 686239 (-)
Gene ID: Rep_1004_c_27_636
Type: TC
Location: 686669 - 688180 (+)
Gene ID: Rep_1004_c_27_637
Type: TF
Location: 688177 - 688800 (-)
Gene ID: Rep_1004_c_27_638
Type: STP
Location: 688811 - 690595 (-)
Gene ID: Rep_1004_c_27_639
Type: TC
Location: 690946 - 692340 (+)
Gene ID: Rep_1004_c_27_640
Type:
Location: 693646 - 694011 (+)
Gene ID: Rep_1004_c_27_641
Type: pfam
Location: 694192 - 695154 (+)
Gene ID: Rep_1004_c_27_642
Type: TC
Location: 695329 - 696378 (+)
Gene ID: Rep_1004_c_27_643
Type: TC
Location: 696448 - 697557 (+)
Gene ID: Rep_1004_c_27_644
Type: TC
Location: 697585 - 699765 (+)
Gene ID: Rep_1004_c_27_645
Type: TC
Location: 699770 - 701068 (+)
Gene ID: Rep_1004_c_27_646
Type: pfam
Location: 701049 - 701897 (+)
Gene ID: Rep_1004_c_27_647
Type:
Location: 701904 - 703058 (+)
Gene ID: Rep_1004_c_27_648
Type: CAZyme
Location: 703062 - 703967 (+)
Gene ID: Rep_1004_c_27_649
Type: CAZyme
Location: 703969 - 705024 (+)
Gene ID: Rep_1004_c_27_650
Type: CAZyme
Location: 705032 - 705775 (+)
Gene ID: Rep_1004_c_27_651
Type:
Location: 705778 - 707646 (+)
Gene ID: Rep_1004_c_27_652
Type: TC
Location: 707939 - 711700 (+)
Gene ID: Rep_1004_c_27_653
Type: TC
Location: 711697 - 713241 (+)
Gene ID: Rep_1004_c_27_654
Type: pfam
Location: 713238 - 713960 (+)
Gene ID: Rep_1004_c_27_655
Type: TC
Location: 713963 - 714640 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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