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Cluster: Rep_1004_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1004_c_17 Rep_1004_c_17_27 23633 24448 - 3.A.1.24.1
NULL(UNKNOWN) Rep_1004_c_17 Rep_1004_c_17_28 24685 25203 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1004_c_17 Rep_1004_c_17_29 25351 25776 + Usp
CAZyme Rep_1004_c_17 Rep_1004_c_17_30 25820 28195 - GH63
NULL(UNKNOWN) Rep_1004_c_17 Rep_1004_c_17_31 28213 29283 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_1004_c_17 Rep_1004_c_17_32 29615 30595 + LacI
CAZyme Rep_1004_c_17 Rep_1004_c_17_33 30762 33851 + GH2
pfam Rep_1004_c_17 Rep_1004_c_17_34 33848 34300 + DUF386
TC Rep_1004_c_17 Rep_1004_c_17_35 34359 35861 + 2.A.3.7.4
Gene ID: Rep_1004_c_17_27
Type: TC
Location: 23633 - 24448 (-)
Gene ID: Rep_1004_c_17_28
Type:
Location: 24685 - 25203 (+)
Gene ID: Rep_1004_c_17_29
Type: pfam
Location: 25351 - 25776 (+)
Gene ID: Rep_1004_c_17_30
Type: CAZyme
Location: 25820 - 28195 (-)
Gene ID: Rep_1004_c_17_31
Type:
Location: 28213 - 29283 (-)
Gene ID: Rep_1004_c_17_32
Type: TF
Location: 29615 - 30595 (+)
Gene ID: Rep_1004_c_17_33
Type: CAZyme
Location: 30762 - 33851 (+)
Gene ID: Rep_1004_c_17_34
Type: pfam
Location: 33848 - 34300 (+)
Gene ID: Rep_1004_c_17_35
Type: TC
Location: 34359 - 35861 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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