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Cluster: Rep_1001_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1001_c_37 Rep_1001_c_37_14 10876 11235 - 4.A.4.1.1
TC Rep_1001_c_37 Rep_1001_c_37_15 11260 12276 - 4.A.4.1.1
TC Rep_1001_c_37 Rep_1001_c_37_16 12294 12842 - 4.A.4.1.1
NULL(UNKNOWN) Rep_1001_c_37 Rep_1001_c_37_17 13172 13420 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1001_c_37 Rep_1001_c_37_18 13343 14842 - 2.A.39.3.4
TF Rep_1001_c_37 Rep_1001_c_37_19 14985 15707 + GntR
pfam Rep_1001_c_37 Rep_1001_c_37_20 15704 16435 + Asp_Glu_race
CAZyme Rep_1001_c_37 Rep_1001_c_37_21 16470 17429 + CE4
pfam Rep_1001_c_37 Rep_1001_c_37_22 17524 18255 - Aldolase_II
TC Rep_1001_c_37 Rep_1001_c_37_23 18299 19114 - 3.A.1.3.24
pfam Rep_1001_c_37 Rep_1001_c_37_24 19138 20010 - PhyH
TC Rep_1001_c_37 Rep_1001_c_37_25 20038 21561 - 3.A.1.3.24
Gene ID: Rep_1001_c_37_14
Type: TC
Location: 10876 - 11235 (-)
Gene ID: Rep_1001_c_37_15
Type: TC
Location: 11260 - 12276 (-)
Gene ID: Rep_1001_c_37_16
Type: TC
Location: 12294 - 12842 (-)
Gene ID: Rep_1001_c_37_17
Type:
Location: 13172 - 13420 (+)
Gene ID: Rep_1001_c_37_18
Type: TC
Location: 13343 - 14842 (-)
Gene ID: Rep_1001_c_37_19
Type: TF
Location: 14985 - 15707 (+)
Gene ID: Rep_1001_c_37_20
Type: pfam
Location: 15704 - 16435 (+)
Gene ID: Rep_1001_c_37_21
Type: CAZyme
Location: 16470 - 17429 (+)
Gene ID: Rep_1001_c_37_22
Type: pfam
Location: 17524 - 18255 (-)
Gene ID: Rep_1001_c_37_23
Type: TC
Location: 18299 - 19114 (-)
Gene ID: Rep_1001_c_37_24
Type: pfam
Location: 19138 - 20010 (-)
Gene ID: Rep_1001_c_37_25
Type: TC
Location: 20038 - 21561 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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