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Cluster: Rep_1001_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1001_c_33 Rep_1001_c_33_185 217287 218006 + GT51
STP Rep_1001_c_33 Rep_1001_c_33_186 218009 218281 - PTS-HPr
pfam Rep_1001_c_33 Rep_1001_c_33_187 218278 219132 - RapZ-like_N | PapZ_C
TC Rep_1001_c_33 Rep_1001_c_33_188 219182 219661 - 4.A.2.1.7
pfam Rep_1001_c_33 Rep_1001_c_33_189 219814 220101 - Ribosomal_S30AE
pfam Rep_1001_c_33 Rep_1001_c_33_190 220123 221559 - Sigma54_AID | Sigma54_DBD | Sigma54_CBD
TC Rep_1001_c_33 Rep_1001_c_33_191 221608 222333 - 1.B.42.1.2
TC Rep_1001_c_33 Rep_1001_c_33_192 222339 222893 - 1.B.42.1.2
TC Rep_1001_c_33 Rep_1001_c_33_193 222862 223443 - 1.B.42.1.2
pfam Rep_1001_c_33 Rep_1001_c_33_194 223440 224006 - Hydrolase_3
STP Rep_1001_c_33 Rep_1001_c_33_195 224020 225006 - CBS | CBS | SIS
TC Rep_1001_c_33 Rep_1001_c_33_196 225023 226003 - 2.A.19.5.1
TC Rep_1001_c_33 Rep_1001_c_33_197 226216 227031 + 3.A.1.27.3
TC Rep_1001_c_33 Rep_1001_c_33_198 227036 227818 + 3.A.1.27.3
TC Rep_1001_c_33 Rep_1001_c_33_199 227823 228377 + 3.A.1.27.3
TC Rep_1001_c_33 Rep_1001_c_33_200 228391 229026 + 3.A.1.27.3
TC Rep_1001_c_33 Rep_1001_c_33_201 229026 229322 + 3.A.1.27.3
Gene ID: Rep_1001_c_33_185
Type: CAZyme
Location: 217287 - 218006 (+)
Gene ID: Rep_1001_c_33_186
Type: STP
Location: 218009 - 218281 (-)
Gene ID: Rep_1001_c_33_187
Type: pfam
Location: 218278 - 219132 (-)
Gene ID: Rep_1001_c_33_188
Type: TC
Location: 219182 - 219661 (-)
Gene ID: Rep_1001_c_33_189
Type: pfam
Location: 219814 - 220101 (-)
Gene ID: Rep_1001_c_33_190
Type: pfam
Location: 220123 - 221559 (-)
Gene ID: Rep_1001_c_33_191
Type: TC
Location: 221608 - 222333 (-)
Gene ID: Rep_1001_c_33_192
Type: TC
Location: 222339 - 222893 (-)
Gene ID: Rep_1001_c_33_193
Type: TC
Location: 222862 - 223443 (-)
Gene ID: Rep_1001_c_33_194
Type: pfam
Location: 223440 - 224006 (-)
Gene ID: Rep_1001_c_33_195
Type: STP
Location: 224020 - 225006 (-)
Gene ID: Rep_1001_c_33_196
Type: TC
Location: 225023 - 226003 (-)
Gene ID: Rep_1001_c_33_197
Type: TC
Location: 226216 - 227031 (+)
Gene ID: Rep_1001_c_33_198
Type: TC
Location: 227036 - 227818 (+)
Gene ID: Rep_1001_c_33_199
Type: TC
Location: 227823 - 228377 (+)
Gene ID: Rep_1001_c_33_200
Type: TC
Location: 228391 - 229026 (+)
Gene ID: Rep_1001_c_33_201
Type: TC
Location: 229026 - 229322 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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