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Cluster: Rep_1001_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1001_c_33 Rep_1001_c_33_145 167555 168889 - 1.B.19.1.1
TC Rep_1001_c_33 Rep_1001_c_33_146 169103 170065 - 8.A.5.1.6
CAZyme Rep_1001_c_33 Rep_1001_c_33_147 170454 171587 + GH10
STP Rep_1001_c_33 Rep_1001_c_33_148 171689 173350 - MCPsignal
TF Rep_1001_c_33 Rep_1001_c_33_149 173913 174125 - CSD
TC Rep_1001_c_33 Rep_1001_c_33_150 174559 174783 + 9.A.8.1.10
TC Rep_1001_c_33 Rep_1001_c_33_151 174783 177104 + 9.A.8.1.10
CAZyme Rep_1001_c_33 Rep_1001_c_33_152 177967 178965 + GT2
pfam Rep_1001_c_33 Rep_1001_c_33_153 178962 180266 + Polysacc_synt | Polysacc_synt_3
CAZyme Rep_1001_c_33 Rep_1001_c_33_154 180669 181664 + GT2
Gene ID: Rep_1001_c_33_145
Type: TC
Location: 167555 - 168889 (-)
Gene ID: Rep_1001_c_33_146
Type: TC
Location: 169103 - 170065 (-)
Gene ID: Rep_1001_c_33_147
Type: CAZyme
Location: 170454 - 171587 (+)
Gene ID: Rep_1001_c_33_148
Type: STP
Location: 171689 - 173350 (-)
Gene ID: Rep_1001_c_33_149
Type: TF
Location: 173913 - 174125 (-)
Gene ID: Rep_1001_c_33_150
Type: TC
Location: 174559 - 174783 (+)
Gene ID: Rep_1001_c_33_151
Type: TC
Location: 174783 - 177104 (+)
Gene ID: Rep_1001_c_33_152
Type: CAZyme
Location: 177967 - 178965 (+)
Gene ID: Rep_1001_c_33_153
Type: pfam
Location: 178962 - 180266 (+)
Gene ID: Rep_1001_c_33_154
Type: CAZyme
Location: 180669 - 181664 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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