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Cluster: Rep_1001_CGC44

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1001_c_33 Rep_1001_c_33_92 108082 109173 - 3.A.1.1.4
pfam Rep_1001_c_33 Rep_1001_c_33_93 109186 109785 - Acetyltransf_1
STP Rep_1001_c_33 Rep_1001_c_33_94 110309 111643 + SBP_bac_1
TC Rep_1001_c_33 Rep_1001_c_33_95 111707 112579 + 3.A.1.1.36
TC Rep_1001_c_33 Rep_1001_c_33_96 112579 113394 + 3.A.1.1.41
CAZyme Rep_1001_c_33 Rep_1001_c_33_97 113432 114763 + GH28
pfam Rep_1001_c_33 Rep_1001_c_33_98 114765 115835 - Iso_dh
TF Rep_1001_c_33 Rep_1001_c_33_99 115971 116903 + HTH_1
TC Rep_1001_c_33 Rep_1001_c_33_100 117058 118494 + 1.B.52.2.1
Gene ID: Rep_1001_c_33_92
Type: TC
Location: 108082 - 109173 (-)
Gene ID: Rep_1001_c_33_93
Type: pfam
Location: 109186 - 109785 (-)
Gene ID: Rep_1001_c_33_94
Type: STP
Location: 110309 - 111643 (+)
Gene ID: Rep_1001_c_33_95
Type: TC
Location: 111707 - 112579 (+)
Gene ID: Rep_1001_c_33_96
Type: TC
Location: 112579 - 113394 (+)
Gene ID: Rep_1001_c_33_97
Type: CAZyme
Location: 113432 - 114763 (+)
Gene ID: Rep_1001_c_33_98
Type: pfam
Location: 114765 - 115835 (-)
Gene ID: Rep_1001_c_33_99
Type: TF
Location: 115971 - 116903 (+)
Gene ID: Rep_1001_c_33_100
Type: TC
Location: 117058 - 118494 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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