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Cluster: Rep_1001_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1001_c_31 Rep_1001_c_31_69 65193 73775 - GH94 | GT84
pfam Rep_1001_c_31 Rep_1001_c_31_70 75085 75624 - CM_2
TC Rep_1001_c_31 Rep_1001_c_31_71 76194 78122 + 1.B.52.2.1
TC Rep_1001_c_31 Rep_1001_c_31_72 78261 78638 - 2.A.7.22.2
TC Rep_1001_c_31 Rep_1001_c_31_73 78635 78958 - 2.A.7.22.2
CAZyme Rep_1001_c_31 Rep_1001_c_31_74 78958 80619 - GT83
pfam Rep_1001_c_31 Rep_1001_c_31_75 80625 81518 - Polysacc_deac_1
pfam Rep_1001_c_31 Rep_1001_c_31_76 81515 83497 - Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
CAZyme Rep_1001_c_31 Rep_1001_c_31_77 83497 84477 - GT2
Gene ID: Rep_1001_c_31_69
Type: CAZyme
Location: 65193 - 73775 (-)
Gene ID: Rep_1001_c_31_70
Type: pfam
Location: 75085 - 75624 (-)
Gene ID: Rep_1001_c_31_71
Type: TC
Location: 76194 - 78122 (+)
Gene ID: Rep_1001_c_31_72
Type: TC
Location: 78261 - 78638 (-)
Gene ID: Rep_1001_c_31_73
Type: TC
Location: 78635 - 78958 (-)
Gene ID: Rep_1001_c_31_74
Type: CAZyme
Location: 78958 - 80619 (-)
Gene ID: Rep_1001_c_31_75
Type: pfam
Location: 80625 - 81518 (-)
Gene ID: Rep_1001_c_31_76
Type: pfam
Location: 81515 - 83497 (-)
Gene ID: Rep_1001_c_31_77
Type: CAZyme
Location: 83497 - 84477 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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