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Cluster: Rep_1001_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1001_c_28 Rep_1001_c_28_454 482429 483865 + 2.A.1.1.120
pfam Rep_1001_c_28 Rep_1001_c_28_455 483892 484815 + AP_endonuc_2
CAZyme Rep_1001_c_28 Rep_1001_c_28_456 484830 486008 + GH109
NULL(UNKNOWN) Rep_1001_c_28 Rep_1001_c_28_457 486425 486550 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_1001_c_28 Rep_1001_c_28_458 486616 486912 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1001_c_28 Rep_1001_c_28_459 487181 489235 + 1.B.52.2.1
CAZyme Rep_1001_c_28 Rep_1001_c_28_460 489409 490833 - GT20
pfam Rep_1001_c_28 Rep_1001_c_28_461 490945 491496 - Acetyltransf_1 | Acetyltransf_7
NULL(UNKNOWN) Rep_1001_c_28 Rep_1001_c_28_462 491874 491990 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1001_c_28 Rep_1001_c_28_463 492313 493332 + 1.A.26.1.4
Gene ID: Rep_1001_c_28_454
Type: TC
Location: 482429 - 483865 (+)
Gene ID: Rep_1001_c_28_455
Type: pfam
Location: 483892 - 484815 (+)
Gene ID: Rep_1001_c_28_456
Type: CAZyme
Location: 484830 - 486008 (+)
Gene ID: Rep_1001_c_28_457
Type:
Location: 486425 - 486550 (+)
Gene ID: Rep_1001_c_28_458
Type:
Location: 486616 - 486912 (-)
Gene ID: Rep_1001_c_28_459
Type: TC
Location: 487181 - 489235 (+)
Gene ID: Rep_1001_c_28_460
Type: CAZyme
Location: 489409 - 490833 (-)
Gene ID: Rep_1001_c_28_461
Type: pfam
Location: 490945 - 491496 (-)
Gene ID: Rep_1001_c_28_462
Type:
Location: 491874 - 491990 (+)
Gene ID: Rep_1001_c_28_463
Type: TC
Location: 492313 - 493332 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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