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Cluster: Rep_1001_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1001_c_28 Rep_1001_c_28_39 39301 40008 + 1.A.14.2.2
TC Rep_1001_c_28 Rep_1001_c_28_40 40050 41015 - 4.D.2.4.3
pfam Rep_1001_c_28 Rep_1001_c_28_41 41015 42259 - PLDc | PLDc_2 | PLDc_2
pfam Rep_1001_c_28 Rep_1001_c_28_42 42256 43017 - Exo_endo_phos
TC Rep_1001_c_28 Rep_1001_c_28_43 43195 43587 + 9.B.15.1.1
TC Rep_1001_c_28 Rep_1001_c_28_44 43811 45160 + 1.I.1.1.3
pfam Rep_1001_c_28 Rep_1001_c_28_45 45163 46149 + Dus
pfam Rep_1001_c_28 Rep_1001_c_28_46 46174 47091 - PPK2
TC Rep_1001_c_28 Rep_1001_c_28_47 47106 48710 - 2.A.20.1.1
pfam Rep_1001_c_28 Rep_1001_c_28_48 48874 49896 + CorA
peptidase Rep_1001_c_28 Rep_1001_c_28_49 49990 51132 - C82.A04
CAZyme Rep_1001_c_28 Rep_1001_c_28_50 51329 53143 - GH15
sulfatase Rep_1001_c_28 Rep_1001_c_28_51 53300 54073 + S1_2
TC Rep_1001_c_28 Rep_1001_c_28_52 54067 54648 - 9.B.27.2.7
TC Rep_1001_c_28 Rep_1001_c_28_53 54856 55443 + 9.B.29.3.1
peptidase Rep_1001_c_28 Rep_1001_c_28_54 55619 56566 + S11.002
TC Rep_1001_c_28 Rep_1001_c_28_55 56702 59152 + 1.A.23.1.2
pfam Rep_1001_c_28 Rep_1001_c_28_56 59215 60918 - FAD_binding_4 | Lact-deh-memb
CAZyme Rep_1001_c_28 Rep_1001_c_28_57 61070 63367 + GH3
pfam Rep_1001_c_28 Rep_1001_c_28_58 63563 64669 + SUFU
TC Rep_1001_c_28 Rep_1001_c_28_59 64845 66743 + 1.B.52.2.1
NULL(UNKNOWN) Rep_1001_c_28 Rep_1001_c_28_60 66657 66878 - NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_1001_c_28 Rep_1001_c_28_61 66892 67425 + NUDIX
TC Rep_1001_c_28 Rep_1001_c_28_62 67607 68518 + 3.A.1.12.15
TC Rep_1001_c_28 Rep_1001_c_28_63 68522 69703 + 3.A.1.12.15
TC Rep_1001_c_28 Rep_1001_c_28_64 69690 70637 + 3.A.1.12.15
TC Rep_1001_c_28 Rep_1001_c_28_65 70625 71356 + 3.A.1.12.15
Gene ID: Rep_1001_c_28_39
Type: TC
Location: 39301 - 40008 (+)
Gene ID: Rep_1001_c_28_40
Type: TC
Location: 40050 - 41015 (-)
Gene ID: Rep_1001_c_28_41
Type: pfam
Location: 41015 - 42259 (-)
Gene ID: Rep_1001_c_28_42
Type: pfam
Location: 42256 - 43017 (-)
Gene ID: Rep_1001_c_28_43
Type: TC
Location: 43195 - 43587 (+)
Gene ID: Rep_1001_c_28_44
Type: TC
Location: 43811 - 45160 (+)
Gene ID: Rep_1001_c_28_45
Type: pfam
Location: 45163 - 46149 (+)
Gene ID: Rep_1001_c_28_46
Type: pfam
Location: 46174 - 47091 (-)
Gene ID: Rep_1001_c_28_47
Type: TC
Location: 47106 - 48710 (-)
Gene ID: Rep_1001_c_28_48
Type: pfam
Location: 48874 - 49896 (+)
Gene ID: Rep_1001_c_28_49
Type: peptidase
Location: 49990 - 51132 (-)
Gene ID: Rep_1001_c_28_50
Type: CAZyme
Location: 51329 - 53143 (-)
Gene ID: Rep_1001_c_28_51
Type: sulfatase
Location: 53300 - 54073 (+)
Gene ID: Rep_1001_c_28_52
Type: TC
Location: 54067 - 54648 (-)
Gene ID: Rep_1001_c_28_53
Type: TC
Location: 54856 - 55443 (+)
Gene ID: Rep_1001_c_28_54
Type: peptidase
Location: 55619 - 56566 (+)
Gene ID: Rep_1001_c_28_55
Type: TC
Location: 56702 - 59152 (+)
Gene ID: Rep_1001_c_28_56
Type: pfam
Location: 59215 - 60918 (-)
Gene ID: Rep_1001_c_28_57
Type: CAZyme
Location: 61070 - 63367 (+)
Gene ID: Rep_1001_c_28_58
Type: pfam
Location: 63563 - 64669 (+)
Gene ID: Rep_1001_c_28_59
Type: TC
Location: 64845 - 66743 (+)
Gene ID: Rep_1001_c_28_60
Type:
Location: 66657 - 66878 (-)
Gene ID: Rep_1001_c_28_61
Type: STP
Location: 66892 - 67425 (+)
Gene ID: Rep_1001_c_28_62
Type: TC
Location: 67607 - 68518 (+)
Gene ID: Rep_1001_c_28_63
Type: TC
Location: 68522 - 69703 (+)
Gene ID: Rep_1001_c_28_64
Type: TC
Location: 69690 - 70637 (+)
Gene ID: Rep_1001_c_28_65
Type: TC
Location: 70625 - 71356 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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