Cluster: Rep_1001_CGC27
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1001
- CGC Family ID: CGCFAM_00293
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1001_c_24 | Rep_1001_c_24_63 | 66360 | 67727 | - | 2.A.1.26.1 |
| TC | Rep_1001_c_24 | Rep_1001_c_24_64 | 67859 | 69889 | - | 2.A.15.1.4 |
| STP | Rep_1001_c_24 | Rep_1001_c_24_65 | 70146 | 70739 | + | TetR_N |
| sulfatase | Rep_1001_c_24 | Rep_1001_c_24_66 | 70757 | 72229 | + | S1_6 |
| CAZyme | Rep_1001_c_24 | Rep_1001_c_24_67 | 72253 | 73935 | + | AA3_2 |
| TC | Rep_1001_c_24 | Rep_1001_c_24_68 | 74333 | 74683 | + | 2.A.7.1.9 |
| TC | Rep_1001_c_24 | Rep_1001_c_24_69 | 74670 | 74999 | + | 2.A.7.1.9 |
Gene ID: Rep_1001_c_24_63
Type: TC
Location: 66360 - 67727 (-)
Type: TC
Location: 66360 - 67727 (-)
Gene ID: Rep_1001_c_24_64
Type: TC
Location: 67859 - 69889 (-)
Type: TC
Location: 67859 - 69889 (-)
Gene ID: Rep_1001_c_24_65
Type: STP
Location: 70146 - 70739 (+)
Type: STP
Location: 70146 - 70739 (+)
Gene ID: Rep_1001_c_24_66
Type: sulfatase
Location: 70757 - 72229 (+)
Type: sulfatase
Location: 70757 - 72229 (+)
Gene ID: Rep_1001_c_24_67
Type: CAZyme
Location: 72253 - 73935 (+)
Type: CAZyme
Location: 72253 - 73935 (+)
Gene ID: Rep_1001_c_24_68
Type: TC
Location: 74333 - 74683 (+)
Type: TC
Location: 74333 - 74683 (+)
Gene ID: Rep_1001_c_24_69
Type: TC
Location: 74670 - 74999 (+)
Type: TC
Location: 74670 - 74999 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea ananatis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.